Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.1e-112 410.6 322 100.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.1e-34 150.6 146 67.1
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 9.9e-29 131.7 270 58.5
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.1e-26 124.0 182 51.6
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.6e-26 122.9 276 64.5
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.3e-24 116.3 205 59.0
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.6e-24 115.9 205 72.2
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 5.6e-24 115.9 275 48.0
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 9.6e-24 115.2 276 52.5
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.8e-23 113.6 276 48.2
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-22 111.7 276 51.4
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.5e-21 107.8 167 53.3
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.3e-20 104.8 182 46.7
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 6.4e-20 102.4 249 64.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.4e-19 101.3 276 45.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.4e-19 101.3 110 61.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.4e-19 100.5 172 52.3
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 5.5e-19 99.4 182 48.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.3e-19 98.6 276 46.4
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 2.1e-18 97.4 66 80.3
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 4.6e-18 96.3 150 48.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 7.9e-18 95.5 182 46.2
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.0e-17 95.1 276 54.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.8e-17 94.4 68 79.4
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.0e-17 93.6 103 54.4
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.9e-17 93.2 185 71.9
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.9e-17 93.2 177 48.0
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 8.7e-17 92.0 66 75.8
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.1e-16 91.7 121 53.7
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.5e-16 91.3 84 73.8
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 5.6e-16 89.4 99 53.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 2.8e-15 87.0 95 60.0
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.7e-15 86.7 96 57.3
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.8e-15 86.3 100 64.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 4.8e-15 86.3 148 45.9
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 6.2e-15 85.9 182 43.4
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 6.2e-15 85.9 116 61.2
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.1e-15 85.5 182 41.8
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.8e-14 84.3 111 53.2
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.4e-14 84.0 148 48.6
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 4.0e-14 83.2 153 47.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.0e-14 83.2 109 55.0
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 5.3e-14 82.8 144 45.8
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 5.3e-14 82.8 66 71.2
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 9.0e-14 82.0 100 54.0
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 9.0e-14 82.0 85 68.2
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.5e-13 81.3 85 64.7
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 1.5e-13 81.3 150 46.0
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.0e-13 80.9 68 64.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.4e-13 80.1 282 44.3
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.4e-13 80.1 66 66.7
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.4e-13 80.1 194 52.6
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 4.5e-13 79.7 66 68.2
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 5.8e-13 79.3 276 43.8
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 7.6e-13 79.0 182 38.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 7.6e-13 79.0 180 42.8
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 1.3e-12 78.2 126 45.2
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.3e-12 78.2 148 42.6
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.7e-12 77.8 274 43.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.7e-12 77.8 183 41.5
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.7e-12 77.8 79 64.6
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.9e-12 77.0 180 37.2
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.9e-12 77.0 150 45.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 3.8e-12 76.6 111 53.2
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 4.9e-12 76.3 174 43.1
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 4.9e-12 76.3 96 62.5
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 6.5e-12 75.9 73 63.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 8.4e-12 75.5 182 40.1
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 8.4e-12 75.5 100 57.0
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 8.4e-12 75.5 182 36.3
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.1e-11 75.1 111 53.2
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 1.1e-11 75.1 180 45.6
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.9e-11 74.3 148 45.3
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.5e-11 73.9 148 46.6
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.5e-11 73.9 175 39.4
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 2.5e-11 73.9 270 47.8
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.2e-11 73.6 182 40.1
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 3.2e-11 73.6 147 41.5
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 3.2e-11 73.6 147 41.5
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 4.2e-11 73.2 126 50.0
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 9.3e-11 72.0 137 45.3
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 9.3e-11 72.0 111 51.4
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 9.3e-11 72.0 182 36.8
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-10 71.6 182 39.6
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.2e-10 71.6 180 46.7
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-10 71.2 182 40.1
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.1e-10 70.9 276 46.0
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.1e-10 70.9 177 40.1
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 2.7e-10 70.5 182 43.4
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.7e-10 70.5 148 43.2
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.5e-10 70.1 182 39.6
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.5e-10 70.1 87 48.3
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.5e-10 70.1 182 36.3
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 6.0e-10 69.3 148 37.8
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 6.0e-10 69.3 182 38.5
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.9e-10 68.9 143 44.1
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.9e-10 68.9 182 40.1
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.3e-09 68.2 182 34.6
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 2.3e-09 67.4 190 41.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 3.9e-09 66.6 148 38.5
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.9e-09 66.6 147 44.9
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.9e-09 66.6 182 40.1
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 5.1e-09 66.2 182 40.1
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 6.7e-09 65.9 183 38.8
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.1e-08 65.1 182 40.7
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.5e-08 64.7 99 50.5
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.9e-08 64.3 179 38.0
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.5e-08 63.9 182 39.0
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 3.3e-08 63.5 45 75.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.3e-08 63.5 147 42.9
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 3.3e-08 63.5 44 72.7
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 4.3e-08 63.2 68 58.8
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 4.3e-08 63.2 183 43.2
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.7e-08 62.8 125 42.4
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 5.7e-08 62.8 182 41.8
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.4e-08 62.4 175 37.1
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 9.6e-08 62.0 183 38.3
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 9.6e-08 62.0 182 39.6
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-07 61.2 203 35.0
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.6e-07 61.2 178 36.0
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.1e-07 60.8 185 37.3
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 3.7e-07 60.1 175 36.0
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 4.8e-07 59.7 109 43.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 4.8e-07 59.7 200 35.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 8.2e-07 58.9 148 36.5
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 8.2e-07 58.9 96 55.2
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.2e-07 58.9 147 41.5
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.1e-06 58.5 148 39.2
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.4e-06 58.2 190 34.7
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.4e-06 58.2 183 35.0
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 1.8e-06 57.8 82 57.3
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.8e-06 57.8 187 33.7
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 2.4e-06 57.4 41 75.6
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.4e-06 57.4 208 35.6
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 3.1e-06 57.0 86 50.0
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 3.1e-06 57.0 183 37.2
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.1e-06 57.0 174 40.2
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.1e-06 56.6 100 41.0
CARHR200100 Cardamine hirsuta HOM05D012923 ORTHO05D014747 5.3e-06 56.2 51 60.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 6.9e-06 55.8 148 35.1
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 9.0e-06 55.5 191 36.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 9.0e-06 55.5 195 39.0


User provided reference genes

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