Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.0e-83 312.4 159 100.0
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.6e-67 259.6 162 84.6
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.7e-61 239.6 140 87.1
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.7e-61 239.6 144 82.6
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.9e-61 238.0 140 85.7
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.1e-60 236.9 138 84.8
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.4e-60 236.5 140 83.6
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 4.1e-60 235.0 140 83.6
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 5.4e-60 234.6 140 83.6
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 9.1e-60 233.8 140 84.3
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.2e-59 233.4 140 84.3
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.2e-59 233.4 140 83.6
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 2.0e-59 232.6 140 83.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.0e-59 232.6 140 84.3
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 4.5e-59 231.5 138 82.6
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.3e-58 229.2 140 82.1
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.3e-58 229.2 140 82.1
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 2.9e-58 228.8 140 81.4
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.9e-58 228.8 140 82.1
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.1e-57 226.9 141 80.1
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.5e-57 226.5 140 80.7
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.9e-57 226.1 140 80.7
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 3.3e-57 225.3 140 79.3
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 5.5e-57 224.6 140 80.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 7.2e-57 224.2 140 78.6
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 7.2e-57 224.2 138 82.6
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.2e-57 224.2 140 80.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 7.2e-57 224.2 140 81.4
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 7.2e-57 224.2 140 81.4
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.2e-57 224.2 140 80.0
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 9.5e-57 223.8 140 80.0
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.2e-56 223.4 140 77.9
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.2e-56 223.4 140 79.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.6e-56 223.0 141 79.4
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.1e-56 222.6 140 79.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.8e-56 222.2 140 77.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.6e-56 221.9 147 75.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 4.7e-56 221.5 140 77.9
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 8.0e-56 220.7 137 77.4
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 8.0e-56 220.7 140 80.0
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 8.0e-56 220.7 140 78.6
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.0e-55 220.3 141 78.0
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.4e-55 219.9 140 78.6
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.3e-55 219.2 140 76.4
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 4.0e-55 218.4 140 77.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 5.2e-55 218.0 140 78.6
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 8.9e-55 217.2 140 75.7
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.9e-55 217.2 140 77.1
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 8.9e-55 217.2 140 76.4
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 8.9e-55 217.2 151 72.8
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 3.4e-54 215.3 140 77.1
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 5.7e-54 214.5 140 75.7
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 5.7e-54 214.5 141 73.8
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 9.8e-54 213.8 142 76.8
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 9.8e-54 213.8 140 75.7
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.7e-53 213.0 138 76.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.2e-53 212.6 140 75.0
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 2.2e-53 212.6 142 74.6
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.7e-53 211.8 140 75.7
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 4.9e-53 211.5 140 76.4
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 4.9e-53 211.5 140 76.4
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 4.9e-53 211.5 140 74.3
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.1e-52 210.3 149 73.8
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-52 209.9 140 75.7
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.4e-52 209.9 138 76.1
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.4e-52 209.9 140 73.6
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.8e-52 209.5 140 75.0
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.4e-52 209.1 140 74.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 5.4e-52 208.0 138 76.8
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 7.0e-52 207.6 141 70.9
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.2e-52 207.2 162 67.3
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.2e-51 206.8 148 71.6
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.2e-51 206.8 138 75.4
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.2e-51 206.8 145 71.7
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.3e-50 202.6 140 70.7
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.0e-50 201.4 148 69.6
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 6.6e-50 201.1 140 69.3
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.6e-50 201.1 140 70.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 8.6e-50 200.7 140 70.7
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 1.1e-49 200.3 140 70.7
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 3.3e-49 198.7 140 71.4
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.3e-49 198.7 140 69.3
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.3e-49 198.7 140 70.0
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 4.3e-49 198.4 140 70.7
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 7.3e-49 197.6 121 80.2
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.1e-48 196.1 117 82.9
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.1e-48 196.1 140 72.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.8e-48 195.7 141 70.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 3.6e-48 195.3 140 69.3
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.0e-47 193.7 149 68.5
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 6.8e-47 191.0 140 69.3
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.2e-46 190.3 140 72.9
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.4e-46 188.7 140 68.6
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.7e-45 186.4 138 65.2
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 3.7e-45 185.3 140 65.0
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 4.9e-45 184.9 140 64.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 4.9e-45 184.9 140 65.0
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.9e-45 184.9 169 60.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 6.4e-45 184.5 141 68.8
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 6.4e-45 184.5 140 65.0
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.1e-44 183.7 140 64.3
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-44 183.3 140 65.0
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.9e-44 183.0 140 64.3
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.9e-44 183.0 140 64.3
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 2.4e-44 182.6 140 64.3
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 3.2e-44 182.2 140 66.4
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 5.4e-44 181.4 140 63.6
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 7.0e-44 181.0 140 64.3
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 7.0e-44 181.0 140 64.3
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.6e-43 179.9 146 62.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 4.6e-43 178.3 140 62.1
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 4.6e-43 178.3 140 62.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 3.9e-42 175.3 140 63.6
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 6.6e-42 174.5 140 62.1
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 3.3e-41 172.2 111 77.5
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 9.5e-41 170.6 140 60.7
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.6e-40 169.9 141 61.7
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 6.2e-40 167.9 120 67.5
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.4e-39 166.8 140 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 5.8e-38 161.4 140 60.7
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.3e-33 145.2 145 54.5
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.3e-33 145.2 145 54.5
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 2.8e-32 142.5 140 54.3
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 6.2e-32 141.4 139 56.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.1e-31 140.6 128 60.2
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 5.2e-31 138.3 140 52.1
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 5.8e-30 134.8 122 59.0
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 7.6e-30 134.4 151 48.3
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 2.2e-29 132.9 128 59.4
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.4e-28 130.2 132 54.5
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 4.6e-27 125.2 74 82.4
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.3e-26 123.6 74 81.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.7e-26 123.2 92 65.2
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.3e-25 117.9 74 74.3
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 2.9e-21 105.9 111 52.3
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.7e-19 99.4 58 79.3
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.7e-19 99.4 58 79.3
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 1.0e-18 97.4 71 63.4
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.3e-18 96.3 69 65.2
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.5e-17 92.8 70 67.1
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.6e-17 90.9 55 76.4
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.4e-15 86.3 54 83.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.6e-14 82.8 63 61.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 1.7e-13 80.1 77 57.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.7e-13 80.1 45 86.7
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.9e-13 79.3 57 68.4
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.1e-12 77.4 125 41.6
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 4.2e-12 75.5 115 40.9
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 3.5e-11 72.4 61 54.1
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 1.7e-10 70.1 49 67.3
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.7e-10 70.1 92 39.1
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.4e-07 60.5 38 73.7
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.8e-07 60.1 50 54.0
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.0e-07 58.9 64 57.8


User provided reference genes

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