Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.3e-263 912.5 456 100.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.5e-235 819.3 463 89.2
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.8e-230 802.4 456 88.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 7.8e-221 770.4 466 83.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 3.6e-218 761.5 457 82.7
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 3.5e-213 745.0 453 83.0
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.0e-212 743.4 460 81.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.6e-212 740.7 458 81.2
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 6.2e-210 734.2 457 81.0
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.1e-209 731.9 459 80.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 5.2e-209 731.1 457 80.3
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.9e-209 730.3 457 80.5
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.5e-208 729.6 457 80.1
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 9.9e-208 726.9 472 78.0
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.9e-207 725.3 456 79.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 3.8e-207 724.9 456 79.2
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 4.9e-207 724.5 456 79.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.2e-206 721.8 459 80.8
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 5.1e-204 714.5 465 76.3
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-203 712.2 461 78.3
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.7e-202 708.0 461 78.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.1e-201 706.8 478 77.8
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.2e-201 704.5 438 80.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.0e-200 702.6 456 77.2
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.0e-200 702.6 461 77.9
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 2.0e-200 702.6 463 77.8
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 5.8e-200 701.0 457 76.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.6e-200 700.7 461 77.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 7.6e-200 700.7 457 75.7
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.7e-199 699.5 461 77.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 4.9e-199 698.0 458 76.6
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.4e-199 697.6 479 76.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.1e-198 696.8 457 75.3
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 5.4e-198 694.5 457 76.6
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.2e-197 693.3 459 75.8
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.7e-197 692.2 456 76.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.0e-197 691.0 456 76.3
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 6.0e-197 691.0 456 77.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.7e-196 689.5 460 76.5
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.6e-196 687.6 458 75.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.8e-194 682.2 459 73.9
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.4e-193 679.1 456 76.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.2e-192 676.8 450 75.6
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.2e-192 676.8 455 74.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.5e-192 676.4 450 75.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.6e-192 675.6 456 73.5
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 5.8e-192 674.5 475 74.3
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 7.1e-190 667.5 457 74.8
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.6e-189 666.4 447 75.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.1e-189 666.0 492 71.1
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 4.6e-189 664.8 459 73.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 8.7e-188 660.6 459 72.8
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.5e-187 659.8 453 72.4
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 5.6e-187 657.9 485 69.5
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 5.6e-187 657.9 450 73.3
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 7.4e-187 657.5 458 73.6
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.6e-186 656.4 536 63.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.2e-186 654.4 450 73.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.8e-185 652.9 439 74.9
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.8e-185 652.9 454 73.3
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.1e-185 652.1 461 72.5
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.1e-185 652.1 470 72.3
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.9e-185 651.0 436 75.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-184 649.8 460 71.1
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.5e-184 649.8 459 71.2
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 2.6e-184 649.0 460 70.9
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.9e-184 647.1 459 70.8
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.7e-183 646.4 461 71.4
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.9e-183 644.8 460 70.4
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.4e-183 644.0 427 75.9
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-182 643.3 461 70.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.4e-182 642.5 450 71.3
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 4.2e-182 641.7 460 72.0
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 9.3e-182 640.6 452 71.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.2e-181 640.2 456 70.6
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-181 639.4 454 71.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.1e-181 639.4 454 71.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.7e-181 639.0 454 70.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.0e-180 637.1 448 72.3
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 6.7e-180 634.4 448 71.4
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.3e-179 632.1 453 71.1
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.3e-179 632.1 451 71.6
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.3e-179 631.7 454 71.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.3e-179 631.7 429 74.4
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 2.8e-178 629.0 456 70.6
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 9.0e-177 624.0 457 70.0
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.6e-176 622.5 453 70.4
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.6e-176 622.5 454 72.2
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 2.6e-176 622.5 453 71.1
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 4.5e-176 621.7 456 69.3
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 5.8e-176 621.3 452 69.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-175 620.2 455 70.5
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.3e-175 620.2 450 71.1
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-175 619.8 453 70.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.9e-175 619.0 416 73.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 8.4e-175 617.5 455 70.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 8.4e-175 617.5 452 69.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.1e-174 614.4 445 71.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 9.3e-174 614.0 461 70.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.2e-173 613.6 445 71.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.2e-173 613.6 456 68.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.6e-173 613.2 456 68.2
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.7e-173 612.5 450 70.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.6e-173 611.7 457 68.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.5e-171 606.7 448 69.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 4.3e-171 605.1 453 69.8
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 5.7e-171 604.7 422 73.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.3e-170 603.6 452 69.7
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.4e-169 600.1 454 68.1
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.8e-169 599.7 454 68.3
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.8e-169 599.7 456 67.5
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.8e-169 599.7 438 72.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 4.1e-169 598.6 438 72.4
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.4e-168 595.5 447 68.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.8e-167 592.0 452 69.0
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.9e-159 565.8 422 69.7
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.6e-157 558.5 444 66.2
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 7.9e-157 557.8 518 57.1
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.0e-156 557.4 440 66.4
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 4.4e-155 552.0 438 66.2
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 9.1e-153 544.3 460 63.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.2e-150 535.4 446 64.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.7e-148 528.1 428 62.1
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-145 520.4 432 65.0
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 5.5e-142 508.4 412 65.3
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.0e-140 504.2 455 59.8
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.4e-137 493.0 323 78.3
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 9.1e-137 491.1 460 59.8
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 7.7e-136 488.0 517 54.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.1e-129 464.5 381 64.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.5e-128 462.6 431 55.5
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.1e-126 457.6 342 68.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.9e-126 456.8 289 80.6
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.0e-124 449.5 471 53.9
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 8.3e-122 441.4 455 53.2
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 3.0e-111 406.4 457 50.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.9e-106 389.0 251 78.9
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.4e-105 386.7 461 48.4
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.5e-102 377.5 261 76.6
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.1e-96 357.1 320 60.9
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.1e-92 343.2 329 59.3
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.4e-91 339.3 291 63.2
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.4e-84 317.0 462 42.9
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 5.4e-81 305.8 194 77.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 3.1e-76 290.0 331 50.8
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.0e-75 287.3 189 74.6
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 9.9e-75 285.0 186 76.9
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.3e-73 278.5 193 69.9
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.6e-72 277.7 217 66.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.1e-72 277.3 522 37.9
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.3e-70 270.0 238 62.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.6e-70 268.5 194 70.6
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.3e-58 231.5 153 77.1
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.9e-58 230.3 215 55.3
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.4e-57 228.0 294 46.6
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.3e-53 214.9 130 80.8
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.9e-50 203.8 120 81.7
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.5e-50 202.6 172 59.3
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.1e-46 191.8 130 68.5
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 9.7e-46 188.7 323 37.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.8e-45 186.4 170 54.7
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 4.7e-40 169.9 299 37.5
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.1e-40 169.5 293 36.9
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 9.7e-38 162.2 79 98.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.5e-33 147.5 159 53.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 3.6e-32 143.7 154 53.2
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 5.7e-30 136.3 125 61.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.3e-26 125.2 126 55.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.3e-26 125.2 79 84.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.8e-26 123.6 76 77.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.3e-23 114.4 114 59.6
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.1e-20 105.5 75 70.7
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 5.7e-14 83.2 112 45.5
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.8e-13 80.9 119 45.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 6.3e-13 79.7 52 75.0
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.0e-12 76.3 53 77.4
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 7.7e-11 72.8 51 70.6
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 8.6e-10 69.3 53 71.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-09 68.6 63 57.1
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.3e-09 67.4 49 71.4
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 6.1e-08 63.2 76 51.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 2.6e-06 57.8 155 29.0
arahy.Tifrunner.gnm1.ann1.6Q3TNQ Arachis hypogaea HOM05D000799 ORTHO05D000629 3.4e-06 57.4 62 45.2
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 7.5e-06 56.2 155 30.3


User provided reference genes

Program Settings