Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.9e-234 815.1 481 100.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 4.3e-177 625.2 520 73.5
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 9.2e-172 607.4 490 77.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 2.7e-171 605.9 489 76.7
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.9e-170 602.1 492 75.4
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 5.1e-170 601.7 490 74.1
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 3.7e-165 585.5 494 75.5
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.6e-163 580.1 490 72.7
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 5.1e-162 575.1 486 74.1
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 2.5e-161 572.8 484 74.2
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 3.3e-161 572.4 489 76.1
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 7.3e-161 571.2 504 69.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 3.1e-159 565.8 491 74.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.2e-158 563.9 476 74.4
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.5e-158 563.5 490 72.2
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.0e-158 563.1 487 70.8
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 2.9e-157 559.3 489 70.6
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.1e-156 557.4 479 72.0
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.9e-153 546.6 489 69.7
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.3e-153 545.8 468 75.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 4.3e-153 545.4 499 66.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.3e-152 543.9 484 69.2
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.8e-152 542.7 432 76.4
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 8.1e-152 541.2 498 70.9
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.0e-151 538.9 492 69.7
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 6.9e-151 538.1 487 71.3
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.5e-150 537.0 492 69.5
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.5e-150 537.0 487 68.2
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 4.4e-150 535.4 491 69.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.3e-149 533.9 488 70.7
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 6.4e-149 531.6 465 70.3
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.1e-148 530.8 484 69.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.4e-148 529.6 490 71.4
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 3.2e-148 529.3 484 69.0
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.1e-145 520.8 444 69.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.1e-145 520.8 492 68.7
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.9e-145 520.0 488 66.6
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 5.6e-145 518.5 483 66.7
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.8e-144 516.2 495 67.9
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.8e-144 516.2 485 69.3
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 5.4e-140 501.9 484 68.0
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 7.9e-139 498.0 489 63.6
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 8.7e-138 494.6 489 66.1
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.3e-137 492.7 430 71.6
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 4.3e-137 492.3 484 64.7
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 9.6e-137 491.1 488 65.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 8.1e-136 488.0 484 64.5
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.4e-135 487.3 593 55.5
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.2e-134 484.2 490 61.8
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.6e-134 483.0 489 64.2
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 5.5e-132 475.3 504 61.9
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.6e-131 472.2 507 64.7
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 3.0e-130 469.5 441 71.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.7e-130 468.0 506 61.7
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.9e-129 466.8 485 66.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.5e-129 466.5 459 66.9
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 3.7e-128 462.6 492 63.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.5e-126 457.2 450 61.1
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 3.4e-126 456.1 487 62.0
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 5.8e-126 455.3 461 63.6
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.8e-125 452.6 407 71.5
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 5.0e-125 452.2 519 58.6
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 5.5e-124 448.7 531 55.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.5e-123 446.0 464 58.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.7e-122 441.4 499 56.7
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.3e-121 439.5 482 62.0
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 8.2e-120 434.9 483 56.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.7e-117 427.2 514 58.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.6e-115 420.6 428 64.7
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.1e-115 420.2 486 53.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.7e-115 419.9 492 58.5
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 3.9e-114 416.0 467 56.3
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 5.1e-114 415.6 497 57.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.7e-112 410.6 385 67.8
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-111 407.1 519 56.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.4e-111 406.8 482 52.7
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 9.1e-111 404.8 533 55.5
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.2e-110 404.4 497 59.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.5e-110 404.1 482 53.5
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.9e-110 402.1 430 63.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.7e-109 400.6 483 53.4
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.5e-109 398.3 303 77.9
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.7e-107 392.5 518 50.6
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 4.4e-105 386.0 482 52.3
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.7e-104 384.0 423 62.6
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.3e-103 379.0 502 55.0
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.5e-102 377.5 489 50.9
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.3e-101 374.4 294 73.8
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.1e-99 367.1 389 65.3
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.8e-98 364.0 508 48.4
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.3e-96 357.8 493 57.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.7e-96 357.5 494 56.7
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 1.7e-96 357.5 494 56.7
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 1.7e-96 357.5 494 56.7
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.2e-96 357.1 306 71.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.8e-96 355.9 462 59.3
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 4.8e-96 355.9 494 57.1
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 4.8e-96 355.9 496 55.8
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 5.3e-95 352.4 352 69.0
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.0e-93 348.2 296 68.9
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.5e-92 343.6 492 55.5
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 3.2e-92 343.2 496 53.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 5.5e-92 342.4 484 53.1
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.3e-69 268.1 220 80.9
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 5.0e-69 266.2 140 97.1
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 2.3e-61 240.7 176 68.2
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 6.2e-59 232.6 167 71.9
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.8e-58 231.1 137 87.6
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.6e-57 227.3 140 81.4
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.4e-50 204.9 167 65.3
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 9.2e-47 192.2 176 59.7
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 9.2e-47 192.2 176 58.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.3e-45 188.3 256 45.3
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.7e-45 188.0 165 60.6
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 3.0e-45 187.2 176 57.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 9.9e-41 172.2 160 58.1
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.4e-39 167.5 248 41.9
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.1e-38 164.5 161 60.9
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.1e-37 159.8 183 47.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 6.6e-37 159.5 151 58.9
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.3e-36 157.1 197 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.5e-33 148.3 155 51.0
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.5e-33 148.3 106 76.4
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.2e-30 138.7 164 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.0e-30 136.3 156 46.2
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 8.7e-29 132.5 103 72.8
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.5e-28 131.7 235 40.4
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.5e-28 131.7 154 62.3
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.1e-27 127.9 227 45.4
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 2.1e-27 127.9 172 53.5
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 2.6e-25 120.9 74 82.4
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.9e-21 107.1 100 67.0
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 6.7e-21 106.3 229 40.6
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 5.6e-20 103.2 68 89.7
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 4.0e-18 97.1 104 60.6
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 5.8e-17 93.2 76 68.4
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 6.5e-16 89.7 65 70.8
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 8.4e-16 89.4 68 60.3
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-15 88.6 128 46.1
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.6e-14 85.1 101 76.2
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-14 83.6 147 39.5
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.0e-13 82.4 69 65.2
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.1e-12 79.0 201 36.3
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.3e-12 77.0 58 60.3
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.8e-11 74.3 76 55.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 6.3e-11 73.2 115 42.6
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 4.1e-10 70.5 69 58.0
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 3.4e-09 67.4 47 83.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 4.5e-09 67.0 47 74.5
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 7.6e-09 66.2 244 32.4
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 2.9e-08 64.3 105 43.8
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 8.4e-08 62.8 33 90.9
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-07 62.4 54 63.0
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.4e-07 62.0 69 68.1
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 7.2e-07 59.7 33 90.9
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 2.1e-06 58.2 104 45.2
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-06 57.0 102 39.2
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 6.1e-06 56.6 32 84.4
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 6.1e-06 56.6 32 84.4
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 6.1e-06 56.6 32 84.4


User provided reference genes

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