Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 8.4e-260 899.8 450 100.0
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.3e-212 743.0 475 82.1
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.4e-201 706.4 468 79.1
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.6e-192 675.6 454 78.0
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 4.4e-192 674.9 392 86.7
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 7.5e-192 674.1 396 85.4
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.3e-191 671.0 387 86.6
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 7.0e-190 667.5 463 75.8
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 7.0e-190 667.5 396 85.6
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 2.0e-189 666.0 392 85.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.7e-188 662.9 451 76.3
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.7e-188 662.9 387 86.3
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.1e-187 660.2 410 82.0
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 3.3e-187 658.7 395 83.5
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 7.3e-187 657.5 395 83.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.1e-186 656.0 392 84.9
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.7e-186 654.8 385 85.2
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.0e-185 653.7 396 84.6
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.0e-185 653.7 459 75.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.8e-185 652.9 420 81.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.6e-184 649.0 363 87.3
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 9.8e-184 647.1 445 76.9
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.2e-183 646.0 365 87.4
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.1e-182 643.7 418 78.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 1.1e-182 643.7 404 82.4
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 9.2e-182 640.6 430 77.0
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 9.2e-182 640.6 397 82.1
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.0e-181 639.4 377 84.1
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.7e-181 639.0 445 76.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.7e-181 639.0 445 76.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.7e-181 639.0 432 76.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.6e-181 638.3 367 84.7
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.6e-181 638.3 421 78.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 4.6e-181 638.3 390 82.3
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.0e-181 637.9 367 84.7
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.0e-181 637.9 397 81.6
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.3e-180 636.7 399 80.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 5.0e-180 634.8 365 86.6
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 8.6e-180 634.0 371 86.3
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.1e-179 633.6 388 82.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.5e-179 633.3 387 84.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.5e-179 632.5 415 78.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 4.3e-179 631.7 365 86.6
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.6e-179 631.3 422 76.5
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.2e-178 630.2 413 78.7
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.2e-178 630.2 385 82.1
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 2.1e-178 629.4 435 75.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 2.8e-178 629.0 436 76.4
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 4.7e-178 628.2 414 79.5
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 8.0e-178 627.5 450 73.3
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 8.0e-178 627.5 365 87.1
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-177 627.1 365 85.5
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.3e-177 625.9 364 85.4
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.1e-177 625.5 366 85.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.0e-177 625.2 433 74.8
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 6.8e-177 624.4 368 84.2
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 6.8e-177 624.4 350 88.9
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 8.9e-177 624.0 361 85.9
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-176 623.2 365 84.9
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.5e-176 623.2 365 84.9
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 2.0e-176 622.9 392 81.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 5.8e-176 621.3 389 81.7
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 9.8e-176 620.5 430 74.7
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.7e-175 619.8 365 84.7
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.9e-175 618.2 365 84.4
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-174 616.7 365 84.1
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.4e-174 616.7 365 84.1
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.9e-174 616.3 439 74.3
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.9e-174 616.3 363 84.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 3.2e-174 615.5 360 85.3
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 4.1e-174 615.1 359 85.5
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 9.2e-174 614.0 341 88.6
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.2e-173 613.6 393 79.6
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 2.7e-173 612.5 363 83.5
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.7e-173 612.5 363 83.5
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 7.8e-173 610.9 373 81.2
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.7e-172 609.8 344 86.9
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.0e-172 609.0 452 70.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 2.5e-171 605.9 353 86.1
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.1e-170 602.8 355 83.7
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.8e-170 602.4 384 78.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 3.6e-170 602.1 431 74.2
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.6e-170 602.1 366 81.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.1e-169 600.5 366 81.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.8e-169 599.7 360 82.8
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.0e-168 596.3 385 77.4
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.4e-168 595.5 350 84.3
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.9e-166 589.7 361 80.3
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 4.1e-166 588.6 353 82.2
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 9.2e-166 587.4 343 84.8
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.1e-165 586.3 426 73.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 6.0e-165 584.7 431 71.2
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-164 583.6 342 85.4
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.3e-164 582.8 495 63.2
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 7.3e-163 577.8 433 71.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 2.1e-162 576.2 342 84.8
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 4.3e-155 552.0 314 87.3
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.9e-151 539.3 325 83.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.9e-151 538.5 431 67.5
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.4e-151 538.1 361 74.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.4e-150 537.0 297 88.2
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.0e-148 529.3 333 81.4
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.9e-147 526.6 431 65.7
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.6e-147 525.0 268 96.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 4.8e-146 521.9 354 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 3.1e-145 519.2 372 70.2
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 3.4e-144 515.8 344 74.4
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 4.5e-144 515.4 348 71.6
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.9e-143 512.7 314 79.0
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.8e-143 512.3 285 87.7
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 3.8e-135 485.7 344 69.2
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.4e-135 485.0 357 69.5
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 5.5e-134 481.9 277 86.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.1e-132 475.3 429 64.1
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.1e-129 466.1 293 81.9
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 4.2e-126 455.7 315 74.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.1e-125 453.4 275 83.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.4e-120 436.0 268 81.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.5e-118 429.9 260 81.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 3.2e-102 376.3 208 91.3
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.7e-93 345.9 187 89.3
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.6e-79 298.9 184 82.1
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.1e-78 298.1 335 47.5
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.5e-78 297.7 330 47.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 2.0e-67 260.8 360 48.6
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-60 238.4 132 87.1
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-60 238.0 143 81.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.9e-58 230.3 334 36.5
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.0e-55 221.9 120 87.5
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.2e-50 204.1 375 37.9
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.4e-43 180.3 109 79.8
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.3e-39 168.3 109 81.7
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.8e-37 160.6 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.1e-37 159.1 185 53.0
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 7.1e-33 146.0 79 93.7
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 5.1e-31 139.8 101 68.3
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.1e-30 138.7 128 60.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 3.1e-28 130.6 79 82.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.0e-28 130.2 84 73.8
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.4e-25 121.7 64 92.2
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 9.3e-25 119.0 77 76.6
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 9.3e-25 119.0 77 76.6
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 9.3e-25 119.0 77 76.6
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.7e-24 117.5 187 36.4
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-23 114.8 77 72.7
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.8e-23 114.8 77 72.7
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 6.7e-23 112.8 77 71.4
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 7.6e-19 99.4 64 78.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 4.3e-14 83.6 54 81.5
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 9.6e-14 82.4 44 90.9
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 9.0e-12 75.9 86 50.0
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.2e-09 67.0 36 88.9
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 1.2e-08 65.5 38 78.9
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 2.7e-08 64.3 67 52.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 6.1e-08 63.2 35 80.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 6.1e-08 63.2 63 55.6
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 7.9e-08 62.8 35 82.9
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 9.7e-06 55.8 40 77.5


User provided reference genes

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