Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002118 Carpinus fangiana HOM05D007180 ORTHO05D009028 1.2e-200 703.0 351 100.0
Haze_16331 Corylus avellana HOM05D007180 ORTHO05D009028 2.1e-189 665.6 368 90.5
CiPaw.02G147300 Carya illinoinensis HOM05D007180 ORTHO05D009028 1.6e-165 586.3 356 82.6
QL05p020883 Quercus lobata HOM05D007180 ORTHO05D009028 7.2e-158 560.8 323 83.9
Prupe.3G062900 Prunus persica HOM05D007180 ORTHO05D009028 1.7e-154 549.7 331 81.0
GSVIVG01017035001 Vitis vinifera HOM05D007180 ORTHO05D009028 2.7e-152 542.3 349 76.8
Ciclev10026017m.g Citrus clementina HOM05D007180 ORTHO05D009028 1.1e-150 537.0 323 81.1
Atru.chr1.3471 Acer truncatum HOM05D007180 ORTHO05D009028 1.5e-150 536.6 333 79.6
MD09G1206800 Malus domestica HOM05D007180 ORTHO05D009028 2.5e-150 535.8 327 79.5
TAR383G0610 Trochodendron aralioides HOM05D007180 ORTHO05D009028 5.5e-150 534.6 326 80.4
RcHm_v2.0_Chr2g0139631 Rosa chinensis HOM05D007180 ORTHO05D009028 2.1e-149 532.7 335 77.9
FvH4_6g32020 Fragaria vesca HOM05D007180 ORTHO05D009028 4.0e-148 528.5 329 78.4
FAN14G2528 Fragaria x ananassa HOM05D007180 ORTHO05D009028 4.0e-148 528.5 329 78.4
MD17G1187500 Malus domestica HOM05D007180 ORTHO05D009028 4.0e-148 528.5 327 78.9
Duzib235G1436 Durio zibethinus HOM05D007180 ORTHO05D009028 2.0e-147 526.2 335 77.6
FAN02G1418 Fragaria x ananassa HOM05D007180 ORTHO05D009028 2.8e-146 522.3 329 78.1
Eucgr.F03061 Eucalyptus grandis HOM05D007180 ORTHO05D009028 4.1e-145 518.5 331 77.6
PGR102G1587 Punica granatum HOM05D007180 ORTHO05D009028 5.9e-144 514.6 327 78.6
Thecc.06G096400 Theobroma cacao HOM05D007180 ORTHO05D009028 7.7e-144 514.2 334 76.6
CANSAT56G0293 Cannabis sativa HOM05D007180 ORTHO05D009028 3.8e-143 511.9 325 78.5
Gorai.003G063600 Gossypium raimondii HOM05D007180 ORTHO05D009028 1.6e-141 506.5 328 76.5
Gohir.A02G119000 Gossypium hirsutum HOM05D007180 ORTHO05D009028 1.8e-140 503.1 315 78.4
Nn3g18173 Nelumbo nucifera HOM05D007180 ORTHO05D009028 5.2e-140 501.5 346 72.3
Gohir.D03G059800 Gossypium hirsutum HOM05D007180 ORTHO05D009028 6.8e-140 501.1 328 75.9
ClCG09G001780 Citrullus lanatus HOM05D007180 ORTHO05D009028 2.6e-139 499.2 346 72.5
Hma1.2p1_1689F.1_g297640 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 1.7e-138 496.5 311 77.5
Actinidia39147 Actinidia chinensis HOM05D007180 ORTHO05D009028 4.9e-138 495.0 346 72.3
CsaV3_7G033560 Cucumis sativus L. HOM05D007180 ORTHO05D009028 6.3e-138 494.6 341 72.7
Medtr8g013830 Medicago truncatula HOM05D007180 ORTHO05D009028 2.4e-137 492.7 341 73.3
TPR.G35011 Trifolium pratense HOM05D007180 ORTHO05D009028 2.4e-137 492.7 320 76.6
Glyma.07G017400 Glycine max HOM05D007180 ORTHO05D009028 4.1e-137 491.9 323 75.9
Glyma.08G202600 Glycine max HOM05D007180 ORTHO05D009028 4.1e-137 491.9 328 75.0
THA.LOC104810533 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 5.4e-137 491.5 312 76.9
Lj3g0006974 Lotus japonicus HOM05D007180 ORTHO05D009028 1.6e-136 490.0 325 75.1
Sed0016027 Sechium edule HOM05D007180 ORTHO05D009028 1.6e-136 490.0 337 71.5
Thhalv10011664m.g Eutrema salsugineum HOM05D007180 ORTHO05D009028 3.5e-136 488.8 310 76.5
Sp1g38710 Schrenkiella parvula HOM05D007180 ORTHO05D009028 3.5e-136 488.8 310 76.5
THA.LOC104817969 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 3.5e-136 488.8 313 76.7
Carub.0001s4110 Capsella rubella HOM05D007180 ORTHO05D009028 5.9e-136 488.0 310 76.5
Psat4g197600 Pisum sativum HOM05D007180 ORTHO05D009028 5.9e-136 488.0 312 77.2
Actinidia09001 Actinidia chinensis HOM05D007180 ORTHO05D009028 1.7e-135 486.5 331 73.7
Aqoxy7G03907 Aquilegia oxysepala HOM05D007180 ORTHO05D009028 2.3e-135 486.1 324 72.5
PSO210G4764 Papaver somniferum HOM05D007180 ORTHO05D009028 3.9e-135 485.3 322 72.0
A06p02010 Brassica napus HOM05D007180 ORTHO05D009028 6.6e-135 484.6 311 76.5
BraA06t23417Z Brassica rapa HOM05D007180 ORTHO05D009028 6.6e-135 484.6 311 76.5
BolC6t35829H Brassica oleracea HOM05D007180 ORTHO05D009028 8.6e-135 484.2 311 76.2
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 8.6e-135 484.2 320 75.9
AT1G52155 Arabidopsis thaliana HOM05D007180 ORTHO05D009028 2.5e-134 482.6 310 75.5
PSO210G1533 Papaver somniferum HOM05D007180 ORTHO05D009028 2.5e-134 482.6 322 72.0
AL1G60250 Arabidopsis lyrata HOM05D007180 ORTHO05D009028 4.3e-134 481.9 310 75.5
Potri.001G187300 Populus trichocarpa HOM05D007180 ORTHO05D009028 5.6e-134 481.5 327 74.3
CARHR042290 Cardamine hirsuta HOM05D007180 ORTHO05D009028 1.2e-133 480.3 310 75.2
Lalb_Chr04g0262871 Lupinus albus HOM05D007180 ORTHO05D009028 1.6e-133 479.9 325 71.7
Phvul.010G146700 Phaseolus vulgaris HOM05D007180 ORTHO05D009028 1.4e-132 476.9 332 71.4
MELO3C024267.2 Cucumis melo HOM05D007180 ORTHO05D009028 4.0e-132 475.3 302 77.2
Aa31LG10G2730 Aethionema arabicum HOM05D007180 ORTHO05D009028 5.8e-131 471.5 313 73.8
C06p07400 Brassica napus HOM05D007180 ORTHO05D009028 9.8e-131 470.7 337 69.7
TWI75G1824 Tripterygium wilfordii HOM05D007180 ORTHO05D009028 1.3e-130 470.3 326 71.5
TAR626G1393 Trochodendron aralioides HOM05D007180 ORTHO05D009028 6.4e-130 468.0 329 70.5
Cc04_g02770 Coffea canephora HOM05D007180 ORTHO05D009028 8.3e-130 467.6 329 69.3
Rhsim12G0201900 Rhododendron simsii HOM05D007180 ORTHO05D009028 1.9e-129 466.5 338 71.0
arahy.Tifrunner.gnm1.ann1.BL3LB4 Arachis hypogaea HOM05D007180 ORTHO05D009028 4.1e-129 465.3 337 69.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.0e-128 463.0 322 72.0
Oeu060509.1 Olea europaea HOM05D007180 ORTHO05D009028 8.6e-127 457.6 325 69.8
Dinv30459 Davidia involucrata HOM05D007180 ORTHO05D009028 1.9e-126 456.4 275 81.8
AUR62031877 Chenopodium quinoa HOM05D007180 ORTHO05D009028 3.6e-125 452.2 310 71.9
Sopen03g039650 Solanum pennellii HOM05D007180 ORTHO05D009028 8.0e-125 451.1 317 69.1
Solyc03g120830.3 Solanum lycopersicum HOM05D007180 ORTHO05D009028 1.4e-124 450.3 317 69.4
Nitab4.5_0007758g0080 Nicotiana tabacum HOM05D007180 ORTHO05D009028 1.2e-123 447.2 317 70.0
PGSC0003DMG401002538 Solanum tuberosum HOM05D007180 ORTHO05D009028 1.5e-123 446.8 317 68.8
Nitab4.5_0001315g0310 Nicotiana tabacum HOM05D007180 ORTHO05D009028 2.0e-123 446.4 317 70.0
EL10Ac9g22108 Beta vulgaris HOM05D007180 ORTHO05D009028 1.7e-122 443.4 310 72.3
Sc10g0007260 Simmondsia chinensis HOM05D007180 ORTHO05D009028 6.4e-122 441.4 297 73.1
BcaC08g43372 Brassica carinata HOM05D007180 ORTHO05D009028 1.9e-121 439.9 279 77.1
Migut.I00923 Erythranthe guttata HOM05D007180 ORTHO05D009028 2.4e-121 439.5 320 66.2
AUR62022171 Chenopodium quinoa HOM05D007180 ORTHO05D009028 4.1e-121 438.7 338 66.3
CAN.G438.9 Capsicum annuum HOM05D007180 ORTHO05D009028 9.2e-121 437.6 317 67.5
HanXRQChr09g0275941 Helianthus annuus HOM05D007180 ORTHO05D009028 8.6e-119 431.0 337 63.8
Peaxi162Scf00038g00837 Petunia axillaris HOM05D007180 ORTHO05D009028 1.1e-118 430.6 317 67.5
Manes.11G035900 Manihot esculenta HOM05D007180 ORTHO05D009028 4.3e-118 428.7 329 65.7
SalBow2G0157 Salvia bowleyana HOM05D007180 ORTHO05D009028 5.6e-118 428.3 322 63.7
Lsat_1_v5_gn_4_100560 Lactuca sativa HOM05D007180 ORTHO05D009028 3.1e-116 422.5 310 64.8
Lj5A56T50 Lonicera japonica HOM05D007180 ORTHO05D009028 9.9e-115 417.5 298 71.8
vmacro16982 Vaccinium macrocarpon HOM05D007180 ORTHO05D009028 1.4e-108 397.1 331 63.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 3.4e-107 392.5 254 77.6
arahy.Tifrunner.gnm1.ann1.Z8Y5NA Arachis hypogaea HOM05D007180 ORTHO05D009028 9.3e-105 384.4 318 64.2
CSS0022642 Camellia sinensis var. sinensis HOM05D007180 ORTHO05D009028 1.0e-103 380.9 259 73.7
Hund06649 Selenicereus undatus HOM05D007180 ORTHO05D009028 6.6e-103 378.3 324 61.4
Hma1.2p1_1689F.1_g297650 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 2.5e-102 376.3 238 78.2
Os11g0466300 Oryza sativa ssp. japonica HOM05D007180 ORTHO05D009028 6.9e-100 368.2 322 56.8
Zm00001eb156840 Zea mays HOM05D007180 ORTHO05D009028 1.4e-97 360.5 303 58.4
AagrBONN_evm.TU.Sc2ySwM_344.297 Anthoceros agrestis HOM05D007180 ORTHO05D009028 1.3e-95 354.0 318 55.0
Mapoly0061s0142 Marchantia polymorpha HOM05D007180 ORTHO05D009028 5.6e-94 348.6 330 52.1
SEGI_07196 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 2.6e-91 339.7 310 52.9
SEGI_18381 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 2.6e-91 339.7 310 52.9
Pp3c4_2280 Physcomitrium patens HOM05D007180 ORTHO05D009028 3.4e-91 339.3 337 50.7
Pp3c3_33050 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.2e-88 330.9 317 51.4
Pp3c10_19810 Physcomitrium patens HOM05D007180 ORTHO05D009028 6.0e-88 328.6 308 52.6
SGA_v2.0_scaffold5G02533 Striga asiatica HOM05D007180 ORTHO05D009028 1.0e-87 327.8 315 54.9
Pp3c12_14730 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.6e-85 320.5 307 51.8
Pp3c27_6190 Physcomitrium patens HOM05D007180 ORTHO05D009028 6.2e-85 318.5 322 48.8
Pp3c5_1000 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.1e-84 317.8 319 49.5
ATR0705G160 Amborella trichopoda HOM05D007180 ORTHO05D009028 4.5e-83 312.4 259 59.1
ECA232G5021 Erigeron canadensis HOM05D000415 ORTHO05D001916 1.9e-81 307.0 236 65.3
DCAR_016200 Daucus carota HOM05D007180 ORTHO05D009028 4.6e-80 302.4 345 49.6
unitig_748.g7435 Utricularia gibba HOM05D007180 ORTHO05D009028 3.3e-70 269.6 316 43.4
Cpa.g.sc109.35 Carica papaya HOM05D007180 ORTHO05D009028 3.1e-68 263.1 323 47.4
SMO364G0215 Selaginella moellendorffii HOM05D007180 ORTHO05D009028 2.2e-61 240.4 213 54.9
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.7e-46 189.1 276 40.2
FAN09G3228 Fragaria x ananassa HOM05D007180 ORTHO05D009028 5.7e-30 136.0 126 57.1
MBI04_g27060_MAGBIO Magnolia biondii HOM05D007180 ORTHO05D009028 2.4e-28 130.6 138 51.4
vmacro02767 Vaccinium macrocarpon HOM05D063291 ORTHO05D009028 2.1e-08 64.3 40 75.0


User provided reference genes

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