Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 7.4e-269 929.9 440 100.0
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 7.5e-229 797.0 440 85.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.3e-224 781.6 450 82.9
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 7.8e-218 760.4 441 82.1
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.7e-217 759.2 441 82.3
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.1e-216 756.5 441 81.0
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.1e-214 748.4 439 80.6
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 6.8e-214 747.3 442 80.1
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 4.4e-213 744.6 438 80.6
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 7.5e-213 743.8 441 80.3
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 2.4e-211 738.8 436 81.0
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.4e-211 738.8 443 79.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 3.2e-211 738.4 440 80.2
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 4.1e-211 738.0 439 80.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.4e-211 737.6 445 80.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.2e-210 736.5 440 79.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 3.5e-210 734.9 438 79.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 4.6e-210 734.6 443 79.5
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.3e-209 733.0 457 78.1
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.3e-209 733.0 444 79.3
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.3e-209 732.3 442 79.2
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.6e-209 730.7 440 80.0
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 9.5e-208 726.9 443 79.5
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.1e-207 725.7 442 78.7
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.8e-207 725.3 439 78.6
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 4.7e-207 724.5 452 76.5
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.2e-207 724.2 441 78.9
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.2e-207 724.2 445 76.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.1e-206 723.4 441 78.2
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.4e-206 723.0 441 79.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.3e-206 722.2 441 78.0
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.1e-206 721.8 435 78.2
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.1e-206 721.8 438 77.6
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 5.2e-206 721.1 437 76.9
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.6e-205 718.8 438 77.4
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 7.5e-205 717.2 442 76.9
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 7.5e-205 717.2 435 77.2
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.3e-204 716.5 443 77.7
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.7e-204 716.1 442 76.9
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.2e-204 715.7 451 75.4
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 3.7e-204 714.9 451 75.4
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 3.7e-204 714.9 441 77.6
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.7e-204 714.9 439 78.1
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 8.3e-204 713.8 443 78.1
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.9e-203 712.6 436 78.4
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.9e-203 712.6 441 77.1
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.9e-203 712.6 437 76.4
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.4e-203 712.2 436 78.7
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.4e-203 712.2 437 76.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 3.2e-203 711.8 437 76.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.1e-203 711.4 451 74.9
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 5.4e-203 711.1 449 75.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.4e-203 711.1 435 77.5
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.2e-202 709.9 448 76.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-202 709.9 452 75.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.2e-202 709.9 439 77.2
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.1e-202 709.1 441 75.5
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.1e-202 709.1 364 87.9
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.7e-202 708.8 442 76.0
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 4.6e-202 708.0 364 87.9
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.6e-202 708.0 448 74.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.0e-201 706.8 440 75.0
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.3e-201 706.4 441 76.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.3e-201 706.4 437 74.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.3e-201 706.4 440 76.1
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.7e-201 706.1 442 75.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.3e-201 705.7 446 74.2
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 3.0e-201 705.3 441 74.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 5.1e-201 704.5 440 75.2
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.6e-201 704.1 452 75.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.6e-201 704.1 437 75.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 8.6e-201 703.7 438 76.5
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 8.6e-201 703.7 441 75.5
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.1e-200 703.4 435 76.3
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.5e-200 703.0 437 74.8
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 5.6e-200 701.0 478 72.4
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 7.3e-200 700.7 441 75.5
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 3.6e-199 698.4 440 74.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.7e-199 698.0 437 74.4
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.7e-199 698.0 435 76.1
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.1e-199 697.2 441 74.8
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.1e-198 696.8 439 74.5
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.8e-198 696.0 444 74.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.8e-198 696.0 442 74.4
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.4e-198 695.7 442 74.9
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.4e-198 695.7 443 74.7
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.1e-198 695.3 440 74.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.0e-198 694.9 442 75.3
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.0e-198 694.9 442 75.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-197 693.3 442 74.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.5e-197 693.0 442 75.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.6e-197 692.2 441 74.6
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.6e-197 692.2 441 74.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.4e-197 691.4 438 74.4
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-196 689.9 442 74.4
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.9e-196 688.7 394 80.2
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 4.9e-196 688.0 432 75.7
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 6.4e-196 687.6 442 74.4
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 9.2e-195 683.7 509 66.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.1e-194 682.6 441 74.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.5e-194 681.8 442 73.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.1e-193 677.9 434 73.3
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.1e-192 676.8 429 74.6
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.7e-191 671.4 432 72.7
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 9.0e-190 667.2 434 74.7
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 9.0e-190 667.2 438 72.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 9.9e-189 663.7 436 72.7
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.2e-187 658.7 434 71.4
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.6e-186 656.4 441 72.3
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.0e-185 653.7 434 72.6
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 8.7e-185 650.6 386 76.7
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 8.7e-185 650.6 442 71.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.6e-183 645.2 431 70.5
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 5.8e-181 637.9 442 71.0
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 7.6e-181 637.5 433 72.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 7.1e-179 630.9 322 89.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-178 629.8 455 66.8
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.5e-176 622.5 322 88.2
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.4e-174 616.7 304 96.7
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.4e-171 606.7 342 81.6
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 2.5e-168 595.9 429 68.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 6.5e-164 581.3 410 67.3
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 4.2e-163 578.6 289 90.7
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.0e-161 573.9 289 90.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.0e-161 572.4 372 68.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.9e-161 572.0 289 89.6
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.3e-151 540.4 348 76.4
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 4.5e-149 531.9 286 81.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.9e-146 521.2 400 68.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.8e-145 517.7 334 67.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.8e-142 510.0 266 86.8
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.8e-129 466.8 378 57.1
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.4e-126 457.2 301 72.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.0e-125 453.4 312 70.8
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.2e-122 444.1 285 69.5
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-110 404.4 342 52.3
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.4e-96 355.9 274 65.7
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-94 351.3 318 52.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.0e-88 330.5 332 46.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.5e-75 287.7 137 97.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.3e-66 258.1 179 67.6
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.4e-56 223.4 109 91.7
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.5e-51 208.0 122 75.4
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.3e-51 206.8 119 75.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 9.0e-49 198.7 137 64.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.5e-46 190.7 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.2e-32 145.2 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.4e-32 143.7 85 76.5
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 7.9e-29 132.5 101 63.4
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 7.9e-29 132.5 80 72.5
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 1.2e-24 118.6 131 55.0
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 9.4e-14 82.4 116 44.8
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 8.8e-12 75.9 52 65.4
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 5.0e-07 60.1 120 35.8
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 4.2e-06 57.0 30 73.3


User provided reference genes

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