Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.3e-140 502.3 270 100.0
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 9.0e-116 420.6 278 84.5
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 5.9e-67 258.5 258 58.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 7.2e-65 251.5 214 65.0
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.8e-55 218.0 282 53.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.3e-50 204.1 276 50.7
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.9e-49 200.3 273 49.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 5.5e-49 198.7 261 50.2
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 9.4e-49 198.0 254 51.2
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 8.0e-48 194.9 308 44.8
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 8.8e-47 191.4 293 41.6
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.9e-45 185.7 248 50.0
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.3e-45 184.9 282 46.1
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 5.4e-44 182.2 257 49.4
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.1e-44 181.4 260 48.5
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.2e-43 181.0 297 44.4
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.6e-43 180.6 213 48.8
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.9e-42 176.4 269 47.6
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 9.5e-41 171.4 280 44.3
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.2e-40 171.0 250 46.4
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.6e-40 170.6 267 43.4
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.6e-40 170.6 294 41.2
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 6.1e-40 168.7 306 42.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.8e-39 167.2 140 66.4
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.3e-39 166.8 300 41.3
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 3.0e-39 166.4 241 44.4
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.2e-38 164.5 294 41.5
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 9.8e-38 161.4 317 40.1
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 2.9e-37 159.8 301 39.2
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 8.3e-37 158.3 219 49.3
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 9.2e-36 154.8 307 39.7
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.3e-33 146.4 277 41.2
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.3e-33 146.4 297 38.4
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.3e-33 146.0 291 39.2
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.6e-32 144.1 297 38.4
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.8e-32 143.3 257 41.2
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 6.2e-32 142.1 286 37.8
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.0e-32 141.7 297 37.4
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 8.0e-32 141.7 178 47.8
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-31 141.0 171 49.1
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.3e-31 140.2 171 49.1
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 2.0e-30 137.1 317 37.5
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.6e-30 136.7 288 39.2
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 4.4e-30 136.0 298 37.2
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.5e-30 135.2 271 37.6
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 9.8e-30 134.8 266 38.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.7e-29 134.0 244 41.8
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.2e-29 133.7 251 41.8
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.2e-29 133.7 254 41.3
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 2.9e-29 133.3 251 41.4
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.7e-29 132.9 246 43.5
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.1e-28 131.3 288 35.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 1.1e-28 131.3 290 36.9
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-28 131.0 251 41.0
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.4e-28 130.2 251 41.0
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.4e-28 130.2 292 34.6
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.2e-28 129.8 243 46.1
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 3.2e-28 129.8 291 36.8
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 9.2e-28 128.3 255 41.2
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.2e-27 127.9 167 52.1
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.2e-27 127.9 167 52.1
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.2e-27 127.9 295 34.6
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 6.0e-27 125.6 310 35.2
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.3e-26 123.6 259 38.2
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.3e-26 123.6 275 35.6
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.0e-26 123.2 303 35.3
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 3.9e-26 122.9 266 36.1
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.9e-26 122.9 258 38.8
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.6e-26 122.1 326 34.0
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 8.6e-26 121.7 267 38.6
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 8.6e-26 121.7 242 39.7
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.5e-25 120.9 264 38.6
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.9e-25 120.6 269 38.7
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.5e-25 120.2 288 34.4
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.3e-25 119.8 284 37.0
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 5.6e-25 119.0 116 56.0
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 9.5e-25 118.2 271 36.5
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 1.2e-24 117.9 248 38.7
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.2e-24 117.9 291 34.7
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.8e-24 116.7 295 33.2
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.6e-24 116.3 305 35.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 6.2e-24 115.5 260 40.0
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-23 114.4 252 38.1
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.4e-23 114.4 202 39.6
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.4e-23 114.4 130 53.1
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.8e-23 114.0 298 33.6
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.3e-23 113.6 283 36.7
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 4.0e-23 112.8 261 34.1
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.2e-23 112.5 261 34.1
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.2e-23 112.5 288 34.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.2e-23 112.5 287 33.1
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.8e-23 112.1 261 34.5
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 8.9e-23 111.7 289 32.9
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.6e-22 110.2 277 35.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 4.4e-22 109.4 321 31.8
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 4.4e-22 109.4 243 37.9
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 5.8e-22 109.0 257 33.5
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 7.5e-22 108.6 289 32.5
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.3e-21 107.8 292 34.9
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.2e-21 107.1 261 33.7
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 2.9e-21 106.7 276 33.7
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.9e-21 106.7 251 34.3
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.9e-21 106.7 272 32.0
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.9e-21 106.7 250 38.8
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 6.4e-21 105.5 132 47.7
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.3e-21 105.1 282 32.3
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 8.3e-21 105.1 288 33.7
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 8.3e-21 105.1 266 35.7
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.9e-20 104.0 273 33.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.9e-20 104.0 267 34.1
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 4.1e-20 102.8 247 35.6
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 4.1e-20 102.8 281 31.0
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 4.1e-20 102.8 282 34.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 5.4e-20 102.4 271 33.9
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.2e-19 101.3 285 35.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.1e-19 100.5 252 34.1
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.7e-19 100.1 250 36.8
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 1.0e-18 98.2 250 33.6
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.3e-18 97.8 291 33.7
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.7e-18 97.4 319 31.3
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 2.3e-18 97.1 254 33.1
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 2.3e-18 97.1 254 33.1
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.3e-18 97.1 265 32.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 3.0e-18 96.7 270 32.6
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 6.6e-18 95.5 346 31.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.5e-17 94.4 297 30.3
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.5e-17 93.6 292 30.8
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 3.3e-17 93.2 261 31.0
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.3e-17 92.0 273 32.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.2e-16 91.3 284 35.2
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.6e-16 90.9 291 31.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.1e-16 90.5 148 40.5
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 3.6e-16 89.7 302 30.8
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.2e-16 89.0 277 29.6
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 6.2e-16 89.0 288 30.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 8.1e-16 88.6 264 31.1
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.8e-15 87.4 264 33.0
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.3e-15 87.0 261 30.7
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 4.0e-15 86.3 287 33.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.0e-15 86.3 277 28.5
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 5.2e-15 85.9 266 30.8
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.5e-14 84.3 292 29.1
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.0e-14 84.0 271 28.8
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.4e-14 83.2 284 29.9
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 4.4e-14 82.8 165 34.5
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 5.8e-14 82.4 285 30.2
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 5.8e-14 82.4 283 32.2
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 7.6e-14 82.0 278 29.1
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 7.6e-14 82.0 139 40.3
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-13 80.9 276 29.3
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.7e-13 80.9 276 29.3
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 2.9e-13 80.1 288 28.8
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.9e-13 80.1 282 29.1
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.9e-13 80.1 282 30.5
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.7e-13 79.7 280 30.0
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.9e-13 79.3 276 32.2
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 6.4e-13 79.0 278 29.5
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 8.4e-13 78.6 258 31.0
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 8.4e-13 78.6 293 29.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 281 29.2
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.9e-12 77.4 285 31.6
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.9e-12 77.4 274 29.9
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 2.4e-12 77.0 243 32.1
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 3.2e-12 76.6 267 31.5
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 3.2e-12 76.6 282 29.8
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 9.2e-12 75.1 294 28.9
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.1e-11 73.9 288 29.2
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.1e-11 73.9 279 28.0
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.0e-10 71.6 258 29.1
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.0e-10 71.6 281 30.2
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 3.0e-10 70.1 164 34.8
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 3.9e-10 69.7 242 30.2
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 5.1e-10 69.3 212 28.8
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.5e-09 67.0 249 29.3
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 3.3e-09 66.6 267 30.0
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.2e-08 64.7 128 34.4
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.1e-08 63.9 218 29.4
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 2.8e-08 63.5 261 28.4
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 3.6e-08 63.2 292 28.1
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.1e-08 62.0 299 28.4
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-07 61.6 137 34.3
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 3.1e-07 60.1 290 27.2
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 4.0e-07 59.7 181 28.7
QL05p023515 Quercus lobata HOM05D047018 ORTHO05D003919 5.2e-07 59.3 100 41.0
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 1.2e-06 58.2 132 35.6


User provided reference genes

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