Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 0.0e+00 1845.5 915 100.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 0.0e+00 1267.7 937 71.9
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 0.0e+00 1259.2 923 71.8
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 0.0e+00 1117.4 750 78.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 4.2e-298 1028.1 907 59.1
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 4.6e-289 998.0 905 58.5
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 3.3e-279 965.3 902 56.8
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.7e-273 945.7 867 57.8
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.6e-270 936.4 877 57.1
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.8e-270 934.9 913 56.8
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.2e-268 930.2 1088 48.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 5.9e-268 927.9 1016 50.0
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.9e-263 912.9 908 54.1
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 5.7e-263 911.4 899 53.7
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.3e-262 910.2 939 52.1
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.8e-259 898.7 899 53.7
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.9e-256 888.6 1064 48.8
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 8.8e-256 887.5 893 54.0
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 9.7e-255 884.0 1050 49.4
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 2.5e-250 869.4 1104 46.6
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 5.5e-250 868.2 895 52.0
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 7.9e-249 864.4 895 52.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.0e-248 864.0 883 53.2
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 5.2e-248 861.7 958 51.7
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 3.3e-247 859.0 1137 46.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 7.4e-247 857.8 1073 48.2
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.8e-245 853.2 713 62.4
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 5.5e-242 841.6 930 50.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.7e-241 839.3 926 51.6
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.7e-238 828.9 859 52.9
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 5.2e-232 808.5 1097 45.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.8e-230 802.7 843 51.7
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 6.3e-230 801.6 948 50.1
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.7e-228 796.2 949 48.5
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.4e-224 783.9 936 46.2
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 5.2e-224 781.9 877 50.7
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 5.2e-224 781.9 876 50.6
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.2e-223 780.8 884 50.6
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.4e-223 779.2 873 50.9
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.2e-222 776.5 1025 45.2
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 8.3e-222 774.6 990 43.9
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.0e-220 770.0 1067 44.0
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.5e-220 769.2 1029 45.2
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 4.5e-220 768.8 1029 45.5
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 4.5e-220 768.8 1029 45.5
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.0e-219 767.7 995 47.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 2.3e-219 766.5 865 50.3
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 2.9e-219 766.1 858 49.1
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 3.8e-219 765.8 864 50.5
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.1e-218 764.2 869 49.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.1e-218 764.2 712 57.7
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.1e-218 764.2 1146 40.6
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.5e-218 763.8 861 50.3
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.5e-218 763.8 861 50.3
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 3.3e-218 762.7 892 49.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 2.8e-217 759.6 863 50.1
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.6e-217 759.2 872 49.9
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.8e-216 756.9 1142 41.7
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 1.8e-216 756.9 997 46.1
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 4.0e-216 755.7 863 50.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 6.8e-216 755.0 1001 45.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 6.8e-216 755.0 1070 43.4
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 3.4e-215 752.7 899 46.9
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 7.5e-215 751.5 1061 43.4
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 9.8e-215 751.1 855 48.8
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 6.4e-214 748.4 1030 44.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.4e-213 745.3 1093 44.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 7.0e-213 745.0 866 48.0
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-211 740.3 921 46.4
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.5e-210 736.5 1118 41.9
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 5.6e-210 735.3 878 47.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 5.6e-210 735.3 1135 39.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 3.1e-208 729.6 1093 41.6
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 3.4e-207 726.1 1059 41.9
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-206 723.8 1148 41.1
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 3.7e-206 722.6 925 46.4
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.1e-202 711.1 988 41.7
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.1e-201 706.8 942 45.6
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 3.6e-201 706.1 940 46.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-200 704.5 1003 43.7
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 2.2e-198 696.8 853 45.5
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.9e-198 696.4 1203 39.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.4e-198 695.3 936 45.2
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.4e-197 694.1 893 46.1
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.8e-192 677.2 858 45.5
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.0e-191 673.7 741 52.0
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-190 671.0 850 46.5
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 3.8e-190 669.5 842 46.7
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 6.0e-188 662.1 1065 39.2
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 6.0e-188 662.1 655 55.3
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.0e-187 661.4 870 47.1
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.0e-187 661.4 939 44.4
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 5.6e-186 655.6 921 43.3
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.1e-179 632.5 1060 38.5
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.2e-175 621.3 701 50.4
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 7.9e-172 608.6 1006 39.6
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 7.4e-170 602.1 924 41.9
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.2e-167 594.7 676 50.9
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.3e-166 591.3 1077 37.2
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-165 587.4 867 42.8
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 7.1e-157 558.9 937 40.7
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 5.1e-155 552.7 631 48.5
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.5e-154 550.4 1214 33.0
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.0e-150 538.5 668 45.8
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-141 508.4 892 34.9
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.0e-139 501.9 859 38.3
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.3e-130 470.3 723 40.4
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.1e-124 449.5 374 59.1
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.1e-120 436.8 526 44.3
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 5.0e-118 429.9 303 74.9
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 2.0e-111 407.9 325 62.5
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.6e-106 391.0 416 47.4
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.3e-99 367.9 829 32.2
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.7e-97 361.7 850 30.1
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.9e-97 360.9 846 31.4
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.7e-89 335.1 579 40.4
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-88 332.4 293 57.0
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.9e-80 305.1 377 46.9
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.9e-73 280.4 206 74.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.1e-71 275.0 493 39.1
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 3.9e-70 270.8 278 55.8
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-69 268.1 360 48.1
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-69 268.1 268 55.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 7.8e-63 246.5 295 46.4
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.6e-60 237.7 223 57.4
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.1e-56 226.1 336 43.8
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 8.7e-54 216.5 636 28.8
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.9e-53 215.3 282 46.5
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.5e-50 204.1 257 47.9
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.7e-49 202.2 368 35.3
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.7e-49 202.2 136 69.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.9e-49 200.7 208 51.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.0e-43 181.0 234 40.2
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.0e-42 178.7 216 47.7
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.8e-42 177.2 347 36.9
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.5e-41 173.7 297 37.4
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 2.6e-34 151.8 210 44.8
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.6e-31 142.5 470 27.9
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.7e-31 141.7 536 27.2
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.4e-30 139.4 116 58.6
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.3e-30 138.7 209 43.1
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 6.9e-27 127.1 119 58.0
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 4.2e-24 117.9 210 37.6
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.7e-21 107.5 191 34.6
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 2.6e-18 98.6 161 41.6
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.2e-15 89.7 196 33.7
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.8e-12 78.6 90 44.4
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 4.5e-10 71.2 48 72.9
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.4e-06 59.7 40 65.0
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 3.0e-06 58.5 32 68.8


User provided reference genes

Program Settings