Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 0.0e+00 1765.4 912 100.0
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 4.6e-249 865.1 684 71.3
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.7e-225 786.2 928 54.1
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 3.5e-180 636.3 541 67.8
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 3.5e-164 583.2 944 44.6
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 8.1e-153 545.4 876 42.6
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.3e-137 495.0 901 38.4
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 5.9e-135 486.1 406 65.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.0e-134 483.0 961 38.1
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.9e-133 481.1 902 37.9
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 7.9e-132 475.7 924 37.1
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.0e-131 475.3 901 37.6
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.4e-131 474.9 923 38.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 4.1e-128 463.4 920 37.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 8.5e-126 455.7 904 36.6
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 4.2e-125 453.4 926 37.8
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.8e-121 439.9 949 35.8
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.9e-119 433.0 938 35.8
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.9e-119 433.0 938 35.8
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.5e-117 428.3 931 36.5
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 2.7e-116 424.1 1025 34.0
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 2.3e-115 421.0 931 37.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 3.0e-115 420.6 949 37.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.8e-115 419.1 933 36.3
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.2e-113 414.5 869 35.4
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.8e-110 403.7 920 34.0
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.2e-109 400.6 828 36.2
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.2e-109 400.6 915 33.8
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.6e-108 397.1 831 36.3
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 8.0e-108 396.0 932 35.8
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.3e-107 394.4 827 36.4
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.2e-106 392.1 935 34.7
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.4e-106 390.6 927 34.1
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 4.1e-104 383.6 963 33.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.2e-103 382.1 935 34.3
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 2.1e-100 371.3 968 34.5
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 6.1e-100 369.8 959 32.7
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 6.1e-100 369.8 916 34.7
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.2e-98 365.5 827 35.3
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 4.9e-97 360.1 934 34.0
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 6.3e-97 359.8 965 31.8
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 5.9e-95 353.2 920 32.5
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.3e-94 352.1 928 32.4
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 2.9e-94 350.9 948 32.4
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.9e-93 348.2 423 47.8
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.6e-92 345.1 936 32.3
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.4e-91 342.0 1022 32.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 7.0e-88 329.7 954 31.1
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 9.2e-88 329.3 936 31.8
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.7e-86 325.1 983 32.3
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 5.6e-85 320.1 870 32.6
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.1e-84 318.2 918 31.2
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 8.0e-84 316.2 929 31.1
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.0e-84 316.2 536 39.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 8.0e-84 316.2 919 33.0
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.4e-83 315.5 928 31.2
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.2e-82 312.4 963 31.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 2.0e-82 311.6 936 30.4
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.6e-82 311.2 919 32.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.4e-80 304.7 925 31.6
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.9e-77 295.0 1013 29.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.9e-77 295.0 928 30.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.1e-76 291.6 923 30.2
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 3.6e-76 290.8 928 30.7
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.6e-76 290.8 856 31.3
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 7.5e-74 283.1 919 31.4
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 2.9e-73 281.2 923 30.1
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 3.2e-72 277.7 883 31.0
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 7.8e-71 273.1 960 29.2
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.7e-70 271.9 405 42.5
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.5e-69 268.9 953 27.7
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 1.5e-69 268.9 924 30.4
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.3e-69 267.7 925 29.4
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.6e-66 258.1 832 29.7
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.4e-66 257.3 911 31.1
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 5.8e-66 256.9 855 30.5
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.2e-65 255.0 903 27.8
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.9e-65 254.6 783 31.3
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 4.9e-65 253.8 856 30.6
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 6.4e-65 253.4 913 29.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 5.4e-64 250.4 371 41.5
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 1.2e-63 249.2 885 27.2
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.6e-63 248.8 975 28.5
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 2.1e-63 248.4 906 28.1
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 6.6e-62 243.4 919 28.8
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 3.3e-61 241.1 939 29.4
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.3e-61 241.1 928 28.2
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 3.3e-61 241.1 984 27.6
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.6e-61 240.4 962 28.4
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 9.6e-61 239.6 952 26.7
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 2.8e-60 238.0 466 39.7
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.6e-60 237.7 913 28.5
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.6e-60 237.7 433 39.5
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 4.0e-59 234.2 910 28.2
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.4e-58 231.1 923 29.4
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 7.6e-58 229.9 771 30.2
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.3e-57 229.2 910 28.5
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.4e-56 225.7 917 27.7
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.1e-53 216.1 905 27.5
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 7.3e-53 213.4 116 94.8
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 4.8e-52 210.7 424 37.7
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 4.5e-50 204.1 388 37.1
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.7e-49 202.2 915 28.0
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.9e-48 198.7 923 27.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 7.1e-48 196.8 929 26.4
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.6e-47 195.7 919 25.8
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 4.3e-45 187.6 925 26.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 3.1e-43 181.4 915 25.6
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 5.3e-43 180.6 926 26.0
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.9e-43 180.3 918 26.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.9e-43 180.3 297 43.4
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.0e-42 178.7 393 35.1
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 5.8e-42 177.2 918 24.8
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 9.9e-42 176.4 193 53.9
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.7e-41 175.6 913 25.6
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.1e-40 172.9 417 34.5
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.0e-39 167.2 385 33.0
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.0e-38 166.4 307 39.4
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.8e-38 165.6 911 25.4
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.9e-38 164.5 914 25.2
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.0e-33 149.8 867 25.3
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 1.7e-33 149.1 920 24.1
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.7e-33 149.1 514 29.6
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 7.1e-32 143.7 927 23.9
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-30 139.4 212 45.3
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.7e-23 115.2 800 25.8
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.1e-21 109.8 78 67.9
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.3e-21 108.2 128 49.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 4.3e-21 107.8 145 43.4
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 5.7e-21 107.5 959 22.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.7e-20 104.8 144 44.4
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 2.6e-18 98.6 221 33.9
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 5.9e-18 97.4 564 24.1
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.0e-17 96.7 300 29.0
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.9e-16 92.4 379 29.6
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.5e-16 92.0 163 36.8
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 3.2e-16 91.7 411 27.7
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 4.2e-16 91.3 205 33.2
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 7.2e-16 90.5 101 46.5
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.2e-15 89.7 83 50.6
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.7e-15 88.6 116 47.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.5e-13 82.8 146 38.4
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.1e-11 76.6 122 39.3
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.4e-11 76.3 84 44.0
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 8.0e-07 60.5 47 59.6


User provided reference genes

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