Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.7e-182 640.6 328 100.0
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 3.1e-171 605.1 325 95.1
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.2e-144 515.4 324 81.8
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.7e-135 485.0 329 77.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 6.8e-126 454.5 327 72.8
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.7e-124 448.7 333 70.9
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.4e-124 448.0 326 69.9
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.7e-121 439.9 322 69.9
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.9e-121 438.7 326 71.2
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.6e-119 433.3 322 73.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.6e-119 433.3 326 70.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.2e-117 427.2 326 68.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 3.5e-114 415.6 327 68.2
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.0e-114 414.8 326 67.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 7.8e-114 414.5 328 69.2
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.0e-113 414.1 325 67.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.1e-112 410.6 326 67.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-112 409.5 329 64.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.6e-111 406.8 294 73.1
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-111 406.8 323 67.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.6e-111 405.6 322 67.7
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.8e-110 403.3 325 68.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.9e-110 401.0 254 81.5
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-109 400.6 326 68.4
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.2e-109 400.6 331 67.1
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.2e-109 400.6 333 65.8
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.7e-108 396.7 307 71.0
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.2e-108 396.4 326 65.0
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.9e-108 395.2 307 71.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-107 394.0 325 67.4
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.4e-107 393.7 308 68.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 7.1e-107 391.3 329 64.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 7.1e-107 391.3 303 68.6
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 7.1e-107 391.3 330 64.5
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 9.2e-107 391.0 329 63.2
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-106 390.6 307 70.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.6e-106 390.2 328 66.2
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.7e-106 389.4 328 66.2
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 4.6e-106 388.7 329 63.5
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.3e-105 386.3 327 63.0
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.9e-105 385.6 325 63.4
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.9e-105 385.6 329 63.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 5.1e-105 385.2 305 68.2
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 8.6e-105 384.4 309 68.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.1e-104 384.0 331 64.4
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.1e-104 384.0 307 67.1
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.5e-104 383.6 329 62.6
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.5e-104 383.6 335 62.1
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.3e-104 382.5 327 63.3
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.6e-104 381.7 322 66.1
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 5.6e-104 381.7 309 67.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 9.6e-104 380.9 288 69.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.1e-103 379.8 328 61.6
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.1e-103 379.8 325 62.5
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.2e-103 378.3 333 61.0
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.2e-103 378.3 333 61.6
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 8.1e-103 377.9 323 63.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.1e-102 377.5 328 61.3
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.4e-102 377.1 327 62.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-102 375.6 322 65.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 6.8e-102 374.8 250 77.2
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-101 374.0 323 65.6
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.0e-101 373.2 326 64.1
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.6e-101 372.9 326 62.0
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.4e-101 372.1 325 61.8
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 5.8e-101 371.7 303 65.0
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.9e-100 369.4 303 64.4
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 3.8e-100 369.0 305 68.9
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 4.9e-100 368.6 301 64.1
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.4e-100 368.2 322 61.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 8.4e-100 367.9 326 61.3
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.2e-99 365.9 327 58.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 5.4e-99 365.2 308 63.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.1e-99 364.8 325 61.2
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 7.1e-99 364.8 263 72.2
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 9.3e-99 364.4 323 60.1
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 9.3e-99 364.4 328 61.0
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 4.6e-98 362.1 321 57.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 4.6e-98 362.1 323 61.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.0e-98 361.7 321 61.7
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.7e-97 360.1 323 59.4
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.3e-97 359.8 324 60.5
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 6.6e-97 358.2 324 59.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 6.6e-97 358.2 324 59.9
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 6.6e-97 358.2 324 59.6
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 6.6e-97 358.2 327 59.6
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-96 357.5 324 59.9
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-96 357.1 327 58.1
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.6e-96 355.1 327 57.2
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.3e-96 354.8 326 58.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 9.6e-96 354.4 328 57.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.8e-95 352.8 327 57.5
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.2e-95 351.7 327 57.2
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 4.0e-94 349.0 327 58.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.3e-94 348.6 325 57.8
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.9e-94 348.2 325 56.9
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.9e-94 348.2 329 58.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.2e-93 347.4 324 58.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.0e-93 346.7 328 58.2
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-93 345.9 324 57.7
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-93 345.9 328 58.5
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 4.5e-93 345.5 356 57.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.8e-93 345.1 325 57.2
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-92 342.8 323 57.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 8.4e-92 341.3 290 66.6
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 8.4e-92 341.3 290 66.6
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.4e-91 339.7 274 67.5
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.2e-91 339.0 307 60.9
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.2e-91 339.0 298 64.1
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.4e-91 338.6 287 63.4
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.1e-91 338.2 315 59.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-90 337.0 327 56.6
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-90 336.7 345 55.1
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.7e-90 336.3 349 55.0
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 3.9e-89 332.4 328 56.7
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.3e-87 327.4 258 67.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.3e-86 322.0 329 53.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.6e-85 319.7 335 53.7
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.5e-85 318.9 314 56.1
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 5.8e-85 318.5 322 55.3
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.2e-83 312.8 302 53.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 5.5e-83 312.0 273 58.2
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 7.1e-83 311.6 261 65.1
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.6e-82 310.5 322 52.5
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.7e-82 309.7 324 51.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.8e-81 307.0 280 55.4
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.3e-81 306.6 325 53.2
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 3.0e-81 306.2 327 52.0
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.9e-81 305.8 251 62.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 6.7e-81 305.1 252 59.9
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 8.7e-81 304.7 327 52.0
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-80 304.3 325 49.5
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.5e-80 303.9 327 51.4
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.5e-80 303.1 325 51.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.3e-80 302.4 299 55.9
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 5.6e-80 302.0 282 58.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 9.6e-80 301.2 332 50.0
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 9.6e-80 301.2 325 51.4
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.6e-80 301.2 328 50.6
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 6.2e-79 298.5 322 51.9
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.1e-78 297.7 307 55.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 5.3e-78 295.4 327 50.8
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 5.3e-78 295.4 293 56.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.3e-76 290.8 323 51.4
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.5e-75 286.6 325 48.0
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 4.6e-74 282.3 324 49.4
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 8.7e-73 278.1 278 56.5
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.9e-72 276.9 267 55.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-70 271.2 235 61.7
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 4.1e-70 269.2 300 50.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 6.9e-70 268.5 277 53.1
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 5.9e-69 265.4 290 50.0
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.5e-68 261.9 158 81.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 5.1e-65 252.3 161 75.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.9e-64 250.4 283 54.1
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-59 234.6 154 79.2
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 4.2e-59 232.6 232 58.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 7.9e-58 228.4 179 60.3
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 6.7e-57 225.3 214 57.0
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.2e-55 220.3 235 54.0
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.7e-55 219.5 154 70.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 4.7e-50 202.6 225 53.8
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.7e-44 184.1 183 56.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-42 177.9 241 46.5
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.4e-38 163.7 249 38.6
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.0e-36 158.3 128 70.3
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 3.2e-35 153.3 233 42.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 8.8e-33 145.2 89 78.7
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.9e-27 127.5 91 69.2
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-26 123.2 76 78.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 3.4e-24 116.7 80 68.8
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 5.7e-24 115.9 83 71.1
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.4e-22 111.3 83 69.9
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.3e-19 100.1 116 44.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.0e-13 80.9 56 71.4


User provided reference genes

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