Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 5.9e-227 790.4 371 100.0
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 2.5e-209 731.9 371 93.3
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 2.4e-159 565.8 378 74.3
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 7.6e-150 534.3 379 70.2
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 6.9e-143 511.1 377 65.8
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.0e-137 493.0 373 63.8
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 2.2e-136 489.6 375 63.7
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 3.7e-136 488.8 388 61.3
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 4.8e-136 488.4 364 65.4
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.1e-135 487.3 369 64.0
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 1.4e-135 486.9 378 63.5
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.8e-135 486.5 383 61.6
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 6.9e-135 484.6 373 63.0
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 9.1e-135 484.2 383 61.4
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 1.5e-134 483.4 380 61.6
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 1.5e-134 483.4 390 60.0
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 4.5e-134 481.9 375 62.7
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 7.7e-134 481.1 373 62.5
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 2.9e-133 479.2 383 60.6
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 3.8e-133 478.8 383 60.8
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.4e-132 476.9 370 62.7
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 2.1e-131 473.0 375 61.6
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 2.7e-131 472.6 373 61.4
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 2.7e-131 472.6 372 61.6
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 1.8e-130 469.9 374 61.0
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 2.6e-129 466.1 395 58.7
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 3.3e-129 465.7 369 60.4
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 7.4e-129 464.5 379 59.4
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 9.7e-129 464.2 340 67.1
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 1.8e-127 459.9 372 60.2
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 7.7e-126 454.5 388 59.5
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 2.2e-125 453.0 374 59.4
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 4.2e-124 448.7 328 65.5
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 9.4e-124 447.6 388 58.0
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 9.4e-124 447.6 372 59.9
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 3.6e-123 445.7 381 57.0
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 4.7e-123 445.3 372 59.4
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.8e-122 443.4 374 58.3
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 8.8e-122 441.0 383 58.2
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 4.4e-121 438.7 371 58.2
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 4.4e-121 438.7 374 58.6
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 7.5e-121 438.0 388 55.4
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 1.7e-120 436.8 374 58.8
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 1.7e-120 436.8 374 58.8
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 8.2e-120 434.5 374 57.0
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 7.0e-119 431.4 379 54.6
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.7e-118 429.5 379 57.5
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 3.5e-118 429.1 372 57.8
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 4.5e-118 428.7 390 56.7
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 5.9e-118 428.3 390 56.7
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 1.0e-117 427.6 394 54.1
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 1.0e-117 427.6 374 57.8
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 2.2e-117 426.4 381 55.9
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 6.1e-115 418.3 374 57.0
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 1.4e-114 417.2 387 54.0
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 1.7e-112 410.2 370 54.1
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 2.0e-110 403.3 385 53.0
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 2.7e-110 402.9 386 53.4
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 1.0e-109 401.0 372 52.2
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 5.0e-109 398.7 377 53.1
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 8.5e-109 397.9 367 54.5
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 1.9e-108 396.7 374 52.4
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 4.2e-108 395.6 377 53.6
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 7.2e-108 394.8 378 54.2
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 8.0e-107 391.3 368 51.4
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 1.0e-101 374.4 376 52.1
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 2.9e-101 372.9 370 49.7
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 1.5e-100 370.5 249 72.3
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 3.3e-100 369.4 369 49.3
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 2.8e-99 366.3 365 51.8
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 8.0e-99 364.8 305 61.0
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 4.9e-96 355.5 283 61.5
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 6.8e-90 335.1 340 52.1
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 8.6e-77 291.6 246 53.7
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 5.8e-65 252.3 203 56.2
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 3.5e-62 243.0 388 35.3
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.3e-59 234.6 365 35.9
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 6.9e-58 228.8 199 56.3
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 8.1e-51 205.3 155 61.9
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 8.7e-45 185.3 343 33.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 8.1e-43 178.7 346 33.2
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 3.8e-40 169.9 89 89.9
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.8e-40 169.9 345 32.5
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 2.1e-30 137.5 220 36.8
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 8.7e-29 132.1 356 27.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.4e-26 124.8 356 28.1
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 7.7e-25 119.0 363 26.7
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 1.0e-24 118.6 99 61.6
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 2.5e-23 114.0 296 29.1
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 9.4e-23 112.1 339 26.5
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 1.2e-22 111.7 369 26.6
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 3.6e-22 110.2 374 25.4
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 1.7e-19 101.3 356 26.7
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 4.8e-19 99.8 358 24.9
ATR0763G218 Amborella trichopoda HOM05D005977 ORTHO05D007546 6.3e-19 99.4 349 25.8
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 1.4e-18 98.2 377 27.3
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 4.1e-18 96.7 153 41.8
THA.LOC104825498 Tarenaya hassleriana HOM05D002809 ORTHO05D004563 5.3e-18 96.3 369 24.7
PGR119G2572 Punica granatum HOM05D002809 ORTHO05D004563 1.5e-17 94.7 376 24.2
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 3.4e-17 93.6 372 22.6
Cfa001126 Carpinus fangiana HOM05D005977 ORTHO05D007546 1.0e-16 92.0 398 26.6
Haze_05266 Corylus avellana HOM05D005977 ORTHO05D007546 1.3e-16 91.7 399 27.3
MapolyY_A0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.7e-16 91.3 266 25.6
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 2.2e-16 90.9 328 25.3
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 3.8e-16 90.1 356 25.8
Psat7g088280 Pisum sativum HOM05D005977 ORTHO05D007546 5.0e-16 89.7 389 25.2
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 1.1e-15 88.6 370 23.0
TPR.G23831 Trifolium pratense HOM05D005977 ORTHO05D007546 1.4e-15 88.2 389 24.9
DCAR_001274 Daucus carota HOM05D005977 ORTHO05D007546 1.9e-15 87.8 372 25.3
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 2.5e-15 87.4 325 25.8
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 5.5e-15 86.3 381 24.9
CAN.G809.67 Capsicum annuum HOM05D005977 ORTHO05D007546 7.2e-15 85.9 372 24.2
Manes.13G079162 Manihot esculenta HOM05D005977 ORTHO05D007546 1.2e-14 85.1 402 25.1
Ca_18233_v3 Cicer arietinum L. HOM05D005977 ORTHO05D007546 1.6e-14 84.7 384 25.5
Phvul.002G188300 Phaseolus vulgaris HOM05D005977 ORTHO05D007546 2.7e-14 84.0 389 24.9
PGSC0003DMG400017736 Solanum tuberosum HOM05D005977 ORTHO05D007546 2.7e-14 84.0 375 23.2
Nitab4.5_0013176g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 3.6e-14 83.6 380 23.7
Lj4g0026547 Lotus japonicus HOM05D005977 ORTHO05D007546 4.7e-14 83.2 397 24.7
Nitab4.5_0006794g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 4.7e-14 83.2 380 23.4
VMungo0251G1017 Vigna mungo HOM05D005977 ORTHO05D007546 6.1e-14 82.8 395 24.8
Gohir.D05G213200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 7.9e-14 82.4 378 25.4
Medtr4g094748 Medicago truncatula HOM05D005977 ORTHO05D007546 7.9e-14 82.4 392 24.0
Solyc02g081670.1 Solanum lycopersicum HOM05D005977 ORTHO05D007546 7.9e-14 82.4 373 23.1
Sopen02g026280 Solanum pennellii HOM05D005977 ORTHO05D007546 1.4e-13 81.6 373 23.1
Glyma.08G088700 Glycine max HOM05D005977 ORTHO05D007546 1.8e-13 81.3 398 24.9
Glyma.05G134000 Glycine max HOM05D005977 ORTHO05D007546 3.9e-13 80.1 397 24.7
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 5.2e-13 79.7 328 24.1
MD01G1073800 Malus domestica HOM05D003005 ORTHO05D004170 5.2e-13 79.7 363 24.5
Atru.chr10.348 Acer truncatum HOM05D005977 ORTHO05D007546 6.7e-13 79.3 403 24.6
Gorai.009G219800 Gossypium raimondii HOM05D007423 ORTHO05D009091 6.7e-13 79.3 378 25.1
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 6.7e-13 79.3 340 23.8
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 8.8e-13 79.0 320 25.3
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 8.8e-13 79.0 333 23.7
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 1.1e-12 78.6 355 24.2
ATR1156G059 Amborella trichopoda HOM05D007753 ORTHO05D009385 2.0e-12 77.8 144 38.9
Atru.chr10.318 Acer truncatum HOM05D005977 ORTHO05D007546 4.4e-12 76.6 404 24.3
arahy.Tifrunner.gnm1.ann1.GTY4NG Arachis hypogaea HOM05D005977 ORTHO05D007546 4.4e-12 76.6 374 23.8
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 4.4e-12 76.6 370 26.2
SEGI_01072 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 4.4e-12 76.6 320 24.1
Sed0013480 Sechium edule HOM05D005977 ORTHO05D007546 7.4e-12 75.9 313 26.2
arahy.Tifrunner.gnm1.ann1.N7CMLX Arachis hypogaea HOM05D005977 ORTHO05D007546 1.3e-11 75.1 371 23.5
Potri.003G074100 Populus trichocarpa HOM05D005977 ORTHO05D007546 1.3e-11 75.1 379 24.3
Peaxi162Scf00048g00175 Petunia axillaris HOM05D005977 ORTHO05D007546 1.7e-11 74.7 373 23.1
PGR042G0935 Punica granatum HOM05D005977 ORTHO05D007546 1.7e-11 74.7 407 23.3
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.2e-11 74.3 306 24.8
TWI73G0225 Tripterygium wilfordii HOM05D005977 ORTHO05D007546 2.2e-11 74.3 372 23.1
Actinidia30638 Actinidia chinensis HOM05D002809 ORTHO05D004563 3.7e-11 73.6 302 24.2
Ah.04g164550 Amaranthus hybridus HOM05D005977 ORTHO05D007546 4.8e-11 73.2 397 21.4
Lalb_Chr13g0293451 Lupinus albus HOM05D005977 ORTHO05D007546 4.8e-11 73.2 362 24.0
Rhsim02G0171300 Rhododendron simsii HOM05D005977 ORTHO05D007546 1.1e-10 72.0 373 24.4
Zm00001eb274390 Zea mays HOM05D005977 ORTHO05D007546 1.1e-10 72.0 367 23.4
Sabra03G0044600 Salix brachista HOM05D005977 ORTHO05D007546 1.4e-10 71.6 383 24.3
AagrBONN_evm.TU.Sc2ySwM_117.2857 Anthoceros agrestis HOM05D002809 ORTHO05D004939 5.3e-10 69.7 335 23.9
Psat4g213360 Pisum sativum HOM05D003005 ORTHO05D004170 5.3e-10 69.7 380 23.9
Lalb_Chr12g0209141 Lupinus albus HOM05D005977 ORTHO05D007546 1.6e-09 68.2 373 23.6
Gohir.A06G024100 Gossypium hirsutum HOM05D007423 ORTHO05D009091 3.5e-09 67.0 380 23.4
Gorai.010G025800 Gossypium raimondii HOM05D007423 ORTHO05D009091 4.5e-09 66.6 375 22.9
Gohir.D06G021200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 7.7e-09 65.9 375 22.9
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 7.7e-09 65.9 46 60.9
PSO675G7102 Papaver somniferum HOM05D005977 ORTHO05D007546 1.7e-08 64.7 395 23.0
unitig_37.g12047 Utricularia gibba HOM05D005977 ORTHO05D007546 2.2e-08 64.3 308 25.0
RcHm_v2.0_Chr6g0309541 Rosa chinensis HOM05D007423 ORTHO05D009091 2.9e-08 63.9 309 23.9
Nn1g04493 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.8e-08 63.5 55 54.5
Dinv12683 Davidia involucrata HOM05D000007 ORTHO05D000039 1.5e-07 61.6 270 25.6
Duzib160G0463 Durio zibethinus HOM05D000007 ORTHO05D000017 2.5e-07 60.8 360 22.2
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 5.5e-07 59.7 228 27.6
Aa31LG8G6310 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.2e-06 58.5 309 24.6
Pp3c14_9030 Physcomitrium patens HOM05D002809 ORTHO05D009385 2.1e-06 57.8 157 24.2
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 30.9
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 30.9
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 3.6e-06 57.0 136 30.9
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 6.1e-06 56.2 139 32.4


User provided reference genes

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