Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.8e-204 714.5 338 100.0
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.4e-126 456.8 344 68.9
Cfa014727 Carpinus fangiana HOM05D008391 ORTHO05D009743 4.4e-112 408.7 318 68.2
Haze_19938 Corylus avellana HOM05D008391 ORTHO05D009743 1.2e-32 144.8 322 32.6
Haze_19940 Corylus avellana HOM05D008391 ORTHO05D009743 4.1e-25 119.8 273 32.2
Haze_19280 Corylus avellana HOM05D008391 ORTHO05D009743 1.9e-22 110.9 378 27.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.7e-21 107.1 57 98.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 2.7e-21 107.1 57 98.2
Haze_19261 Corylus avellana HOM05D008391 ORTHO05D009743 1.0e-20 105.1 379 27.4
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.4e-20 104.8 57 94.7
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.8e-20 104.4 57 94.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.8e-20 104.4 57 94.7
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.8e-20 104.4 57 94.7
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 1.8e-20 104.4 57 94.7
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 4.0e-20 103.2 57 93.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 4.0e-20 103.2 57 93.0
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 6.8e-20 102.4 57 93.0
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 6.8e-20 102.4 57 93.0
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.2e-19 101.7 57 91.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.2e-19 101.7 57 93.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.5e-19 101.3 57 91.2
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 2.6e-19 100.5 57 87.7
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 91.2
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 3.4e-19 100.1 57 89.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 4.4e-19 99.8 57 87.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 4.4e-19 99.8 57 89.5
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 5.7e-19 99.4 57 89.5
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 5.7e-19 99.4 57 86.0
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.7e-19 99.4 57 89.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.7e-19 99.4 57 87.7
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 7.5e-19 99.0 57 87.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 9.8e-19 98.6 57 87.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 9.8e-19 98.6 57 87.7
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 89.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 87.7
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 87.7
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 86.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 87.7
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 86.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 86.0
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.3e-18 98.2 57 86.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.7e-18 97.8 57 89.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.7e-18 97.8 57 86.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.7e-18 97.8 58 84.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.7e-18 97.8 57 86.0
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 2.2e-18 97.4 57 84.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 2.2e-18 97.4 57 87.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 2.8e-18 97.1 57 87.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 3.7e-18 96.7 57 87.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.7e-18 96.7 57 86.0
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.7e-18 96.7 57 86.0
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 4.8e-18 96.3 56 89.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.8e-18 96.3 57 84.2
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 4.8e-18 96.3 57 84.2
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 6.3e-18 95.9 57 86.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 6.3e-18 95.9 57 84.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 6.3e-18 95.9 56 87.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.1e-17 95.1 56 85.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.1e-17 95.1 56 83.9
Haze_19937 Corylus avellana HOM05D008391 ORTHO05D009743 1.4e-17 94.7 295 28.1
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.8e-17 94.4 56 83.9
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 1.8e-17 94.4 57 82.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 2.4e-17 94.0 57 82.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.1e-17 93.6 57 82.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.1e-17 93.6 57 82.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 4.1e-17 93.2 57 86.0
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 4.1e-17 93.2 57 80.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.1e-17 93.2 57 86.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.0e-17 92.4 54 88.9
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 9.1e-17 92.0 57 84.2
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 9.1e-17 92.0 57 84.2
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 9.1e-17 92.0 57 84.2
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 9.1e-17 92.0 57 84.2
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 9.1e-17 92.0 57 84.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 9.1e-17 92.0 56 80.4
Cfa012986 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.2e-16 91.7 298 27.9
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 2.0e-16 90.9 57 80.7
Cfa003300 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.0e-16 90.9 332 28.0
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.0e-16 90.9 57 78.9
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.0e-16 90.9 57 84.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.0e-16 90.9 56 82.1
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 2.7e-16 90.5 57 77.2
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-16 90.5 56 83.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.7e-16 90.5 56 83.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.7e-16 90.5 56 83.9
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.7e-16 90.5 57 77.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.9e-16 89.4 57 78.9
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.9e-16 89.4 56 82.1
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 5.9e-16 89.4 56 82.1
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 5.9e-16 89.4 56 82.1
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 5.9e-16 89.4 55 83.6
Cfa007293 Carpinus fangiana HOM05D008391 ORTHO05D009743 7.7e-16 89.0 375 25.3
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 7.7e-16 89.0 53 81.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 7.7e-16 89.0 56 78.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.3e-15 88.2 56 80.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.7e-15 87.8 56 73.2
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.7e-15 87.8 57 70.2
Haze_14914 Corylus avellana HOM05D008391 ORTHO05D009743 2.9e-15 87.0 316 25.6
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.9e-15 87.0 56 78.6
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.9e-15 87.0 57 75.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-15 86.3 55 81.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.5e-15 85.9 57 75.4
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 6.5e-15 85.9 56 80.4
Cfa016887 Carpinus fangiana HOM05D008391 ORTHO05D009743 6.5e-15 85.9 234 29.5
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 8.6e-15 85.5 57 73.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.5e-14 84.0 57 70.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.5e-14 84.0 55 76.4
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.5e-14 84.0 57 73.7
Cfa007291 Carpinus fangiana HOM05D008391 ORTHO05D009743 3.3e-14 83.6 333 24.9
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 4.2e-14 83.2 57 71.9
Cfa015317 Carpinus fangiana HOM05D008391 ORTHO05D009743 9.5e-14 82.0 170 36.5
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 2.8e-13 80.5 56 73.2
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-13 80.1 53 77.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-13 80.1 53 77.4
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-13 80.1 53 77.4
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-13 80.1 53 77.4
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.6e-13 80.1 59 69.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.6e-13 80.1 56 71.4
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.6e-13 80.1 56 71.4
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 6.1e-13 79.3 61 68.9
Haze_02253 Corylus avellana HOM05D001291 ORTHO05D009743 6.1e-13 79.3 229 29.7
Haze_02263 Corylus avellana HOM05D008391 ORTHO05D009743 6.1e-13 79.3 229 29.7
Haze_21168 Corylus avellana HOM05D008391 ORTHO05D009743 1.8e-12 77.8 309 23.6
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.0e-12 76.6 56 69.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.2e-12 76.3 55 70.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 6.8e-12 75.9 55 70.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.8e-12 75.9 55 70.9
Cfa003301 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.2e-11 75.1 254 24.0
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.5e-11 74.7 230 28.3
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.5e-11 74.7 49 75.5
Haze_14137 Corylus avellana HOM05D008391 ORTHO05D009743 2.6e-11 73.9 214 29.4
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 2.6e-11 73.9 351 21.9
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 7.5e-11 72.4 56 66.1
Cfa005104 Carpinus fangiana HOM05D008391 ORTHO05D009743 9.8e-11 72.0 267 25.1
Cfa017751 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.7e-10 71.2 208 28.4
Haze_14978 Corylus avellana HOM05D008391 ORTHO05D009743 2.8e-10 70.5 213 29.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 4.9e-10 69.7 76 53.9
Haze_13848 Corylus avellana HOM05D008391 ORTHO05D009743 8.3e-10 68.9 174 28.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.1e-09 68.6 56 62.5
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.4e-09 66.2 45 75.6
Haze_02251 Corylus avellana HOM05D000722 ORTHO05D000590 5.4e-09 66.2 261 26.1
Haze_02265 Corylus avellana HOM05D008391 ORTHO05D009743 1.2e-08 65.1 272 23.9
Cfa016866 Carpinus fangiana HOM05D027064 ORTHO05D009743 2.0e-08 64.3 126 31.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-08 64.3 57 56.1
Haze_19712 Corylus avellana HOM05D008391 ORTHO05D009743 5.9e-08 62.8 175 28.6
Haze_19846 Corylus avellana HOM05D027064 ORTHO05D009743 5.9e-08 62.8 111 33.3
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 3.3e-06 57.0 134 27.6
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 7.3e-06 55.8 134 25.4


User provided reference genes

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