Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-22 109.0 54 100.0
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.3e-17 90.9 47 95.7
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-16 87.8 47 91.5
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 6.1e-16 86.7 47 91.5
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-15 85.1 47 91.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.6e-14 81.3 47 85.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.3e-13 79.0 45 84.4
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.3e-13 79.0 47 85.1
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.7e-13 78.6 45 84.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 2.8e-13 77.8 52 78.8
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.7e-13 77.4 47 80.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 4.9e-13 77.0 45 82.2
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.3e-13 76.3 42 88.1
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 2.4e-12 74.7 45 82.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 5.4e-12 73.6 47 78.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 9.2e-12 72.8 45 77.8
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.6e-11 72.0 44 81.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.6e-11 72.0 42 83.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.6e-11 72.0 44 81.8
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.7e-11 71.2 42 81.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.5e-11 70.9 43 81.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 4.5e-11 70.5 45 73.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.5e-11 70.5 44 75.0
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.5e-11 70.5 42 81.0
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.5e-11 70.5 52 71.2
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 4.5e-11 70.5 45 77.8
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 5.9e-11 70.1 47 74.5
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.9e-11 70.1 52 71.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.9e-11 70.1 47 74.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.8e-11 69.7 52 71.2
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.0e-10 69.3 42 81.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.3e-10 68.9 44 77.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.3e-10 68.9 42 78.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.7e-10 68.6 42 83.3
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.7e-10 68.6 49 69.4
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.7e-10 68.6 42 76.2
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.3e-10 68.2 43 79.1
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.3e-10 68.2 43 79.1
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.3e-10 68.2 42 81.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.9e-10 67.4 42 78.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 5.0e-10 67.0 47 74.5
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 8.6e-10 66.2 52 65.4
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 8.6e-10 66.2 44 75.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-09 65.9 42 76.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.1e-09 65.9 42 78.6
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.1e-09 65.9 43 76.7
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.5e-09 65.5 42 76.2
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.5e-09 65.5 42 76.2
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.9e-09 65.1 52 65.4
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.5e-09 64.7 43 74.4
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 3.3e-09 64.3 42 71.4
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.3e-09 63.9 47 66.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 4.3e-09 63.9 42 78.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.3e-09 63.9 42 73.8
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.3e-09 63.9 47 70.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 5.6e-09 63.5 46 69.6
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 7.3e-09 63.2 44 75.0
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.6e-08 62.0 42 71.4
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-08 62.0 42 73.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-08 62.0 42 73.8
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-08 62.0 42 73.8
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.6e-08 62.0 44 70.5
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.1e-08 61.6 42 71.4
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.8e-08 61.2 42 66.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.8e-08 61.2 42 76.2
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.8e-08 61.2 42 71.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.8e-08 61.2 42 73.8
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 3.6e-08 60.8 40 77.5
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.6e-08 60.8 46 69.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.7e-08 60.5 43 72.1
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 6.1e-08 60.1 43 69.8
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 8.0e-08 59.7 42 69.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 8.0e-08 59.7 45 66.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 8.0e-08 59.7 42 71.4
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.4e-07 58.9 44 68.2
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.3e-07 58.2 45 68.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.3e-07 58.2 45 66.7
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 3.1e-07 57.8 42 71.4
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-07 57.8 44 65.9
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.0e-07 57.4 42 64.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 5.2e-07 57.0 43 69.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 5.2e-07 57.0 42 66.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 5.2e-07 57.0 42 66.7
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 5.2e-07 57.0 42 66.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.2e-07 57.0 43 69.8
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 6.8e-07 56.6 47 61.7
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 6.8e-07 56.6 56 55.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 6.8e-07 56.6 44 65.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.9e-07 56.2 43 69.8
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.2e-06 55.8 53 54.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-06 55.5 42 64.3
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-06 55.5 42 64.3
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.5e-06 55.5 44 65.9
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.5e-06 55.5 43 67.4
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.0e-06 55.1 43 69.8
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 3.4e-06 54.3 44 65.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.4e-06 54.3 44 70.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.4e-06 54.3 42 64.3
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 3.4e-06 54.3 42 71.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 5.8e-06 53.5 44 68.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 7.5e-06 53.1 42 59.5
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 7.5e-06 53.1 46 58.7
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 9.8e-06 52.8 37 70.3


User provided reference genes

Program Settings