Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 2.7e-163 578.6 281 100.0
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 9.2e-148 526.9 305 85.6
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 4.6e-131 471.5 277 80.9
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 7.9e-131 470.7 282 79.8
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 2.1e-123 446.0 281 77.6
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 4.0e-119 431.8 281 73.0
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 7.6e-118 427.6 283 71.0
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 7.6e-118 427.6 282 72.7
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 1.3e-117 426.8 281 74.0
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 1.7e-117 426.4 283 71.0
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 8.4e-117 424.1 281 74.4
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 1.2e-115 420.2 281 72.6
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.8e-114 416.4 281 73.0
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 2.3e-114 416.0 272 69.1
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 6.7e-114 414.5 287 71.4
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 2.5e-113 412.5 283 71.4
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 3.3e-113 412.1 283 69.3
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 4.3e-113 411.8 283 70.7
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 7.4e-113 411.0 285 72.3
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 9.6e-113 410.6 257 76.3
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 2.8e-112 409.1 282 68.8
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 3.7e-112 408.7 270 71.1
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 1.1e-111 407.1 282 69.5
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 1.1e-111 407.1 283 69.6
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 1.1e-111 407.1 282 69.1
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 1.4e-111 406.8 282 67.4
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 1.4e-111 406.8 267 70.8
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 1.8e-111 406.4 280 69.6
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 9.0e-111 404.1 278 70.5
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 1.2e-110 403.7 256 73.8
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 1.5e-110 403.3 283 69.3
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 4.5e-110 401.7 282 70.2
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 7.6e-110 401.0 280 69.3
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 1.0e-109 400.6 256 71.9
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 1.0e-109 400.6 276 66.3
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 1.0e-109 400.6 276 66.3
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 1.3e-109 400.2 276 66.7
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 2.9e-109 399.1 284 68.3
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 6.5e-109 397.9 245 74.7
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 1.4e-108 396.7 280 68.9
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 1.9e-108 396.4 281 68.7
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 2.5e-108 396.0 283 67.1
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 3.2e-108 395.6 276 68.8
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 3.2e-108 395.6 280 69.6
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 5.5e-108 394.8 280 67.5
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 9.3e-108 394.0 280 68.6
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 1.2e-107 393.7 263 71.9
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 2.7e-107 392.5 245 75.1
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 1.0e-106 390.6 284 66.5
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 1.8e-106 389.8 279 65.6
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 2.3e-106 389.4 283 67.8
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 3.0e-106 389.0 283 66.4
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 3.0e-106 389.0 281 66.5
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 6.7e-106 387.9 280 67.5
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 1.5e-105 386.7 285 69.1
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 9.7e-105 384.0 283 66.8
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 6.3e-104 381.3 280 66.4
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 6.3e-104 381.3 282 66.7
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 8.2e-104 380.9 281 65.1
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 8.2e-104 380.9 283 66.1
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 8.2e-104 380.9 279 65.9
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 3.1e-103 379.0 260 69.6
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 5.3e-103 378.3 279 65.2
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 2.0e-102 376.3 281 63.0
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 3.4e-102 375.6 285 66.3
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 4.5e-102 375.2 275 66.5
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 1.0e-101 374.0 283 65.4
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 1.7e-101 373.2 256 68.4
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 5.0e-101 371.7 271 65.3
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 8.5e-101 370.9 259 69.1
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 1.9e-100 369.8 267 66.7
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 3.2e-100 369.0 260 70.8
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 3.2e-100 369.0 282 64.5
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 7.2e-100 367.9 255 66.3
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 1.2e-99 367.1 276 63.4
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 1.6e-99 366.7 271 64.9
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 2.7e-99 365.9 276 63.0
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 3.6e-99 365.5 283 64.0
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 4.6e-99 365.2 276 63.4
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 4.6e-99 365.2 276 63.4
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 4.6e-99 365.2 256 66.8
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 6.1e-99 364.8 276 63.0
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 6.1e-99 364.8 276 63.0
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 7.9e-99 364.4 260 67.7
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 7.9e-99 364.4 246 69.5
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 1.0e-98 364.0 256 67.2
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 1.4e-98 363.6 311 58.8
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 1.8e-98 363.2 241 70.5
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 1.8e-98 363.2 240 70.0
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 2.3e-98 362.8 276 62.7
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 2.6e-97 359.4 280 63.2
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 4.4e-97 358.6 277 63.9
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 5.7e-97 358.2 276 62.7
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 1.7e-96 356.7 246 69.1
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 2.8e-96 355.9 203 78.3
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 3.7e-96 355.5 205 76.1
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 3.7e-96 355.5 196 80.6
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 4.8e-96 355.1 281 63.0
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 8.2e-96 354.4 210 74.8
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 1.8e-95 353.2 273 62.3
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 4.2e-84 315.5 216 65.3
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 5.5e-84 315.1 207 68.6
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 8.0e-83 311.2 232 63.8
SalBow2G1302 Salvia bowleyana HOM05D006424 ORTHO05D007945 2.3e-82 309.7 278 58.3
Dinv38123 Davidia involucrata HOM05D006424 ORTHO05D007945 4.2e-76 288.9 209 68.4
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 1.2e-73 280.8 277 49.1
Thecc.06G024600 Theobroma cacao HOM05D006424 ORTHO05D007945 2.0e-73 280.0 206 65.5
Sed0007474 Sechium edule HOM05D006424 ORTHO05D007945 1.4e-71 273.9 208 65.4
Pp3c22_2660 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.6e-70 270.4 245 52.2
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 4.5e-70 268.9 285 48.8
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 1.0e-69 267.7 203 59.1
Pp3c9_11540 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.1e-68 264.2 255 49.8
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 6.3e-64 248.4 211 53.6
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 1.7e-61 240.4 144 75.7
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 5.6e-60 235.3 213 57.7
QL05p029868 Quercus lobata HOM05D006424 ORTHO05D007945 4.9e-56 222.2 151 75.5
arahy.Tifrunner.gnm1.ann1.7R86JN Arachis hypogaea HOM05D006424 ORTHO05D007945 1.6e-54 217.2 279 45.2
SEGI_16074 Sequoiadendron giganteum HOM05D006424 ORTHO05D007945 1.6e-54 217.2 171 59.1
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 2.7e-54 216.5 240 47.1
Psat7g257120 Pisum sativum HOM05D006424 ORTHO05D007945 6.8e-50 201.8 175 58.3
EL10Ac9g21901 Beta vulgaris HOM05D006424 ORTHO05D007945 6.2e-43 178.7 169 55.6
QL05p029832 Quercus lobata HOM05D006424 ORTHO05D007945 3.3e-28 129.8 114 60.5
Oeu000425.1 Olea europaea HOM05D006424 ORTHO05D007945 9.0e-26 121.7 147 46.9
arahy.Tifrunner.gnm1.ann1.ZYH6JG Arachis hypogaea HOM05D006424 ORTHO05D007945 2.4e-15 87.0 56 67.9
arahy.Tifrunner.gnm1.ann1.YP381G Arachis hypogaea HOM05D006424 ORTHO05D007945 5.8e-09 65.9 126 39.7


User provided reference genes

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