Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 5.7e-161 570.9 285 100.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.1e-139 499.2 265 94.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 4.0e-122 441.8 267 82.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.6e-107 393.3 281 74.7
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 3.7e-104 382.1 267 74.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 8.3e-104 380.9 217 85.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.9e-103 379.8 229 80.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 2.4e-103 379.4 213 85.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-103 379.0 213 85.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.2e-102 377.1 213 85.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.2e-102 377.1 213 85.0
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.7e-102 375.9 219 82.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 3.5e-102 375.6 218 83.9
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.6e-102 375.2 244 77.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 6.0e-102 374.8 228 79.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.7e-101 373.2 217 83.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 6.6e-101 371.3 252 72.2
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.6e-101 370.9 212 84.4
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 8.6e-101 370.9 217 83.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.5e-100 369.4 216 83.3
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.5e-100 369.4 259 72.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.3e-100 368.6 238 76.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 7.3e-100 367.9 263 72.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.2e-99 367.1 257 73.2
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.2e-99 367.1 228 77.2
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.6e-99 366.7 252 74.2
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.1e-99 366.3 214 82.2
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.6e-99 365.5 237 76.8
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.6e-99 365.5 226 78.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 6.2e-99 364.8 234 77.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.2e-99 364.8 260 71.5
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 8.0e-99 364.4 265 71.3
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.4e-98 363.6 281 68.3
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.3e-98 362.8 213 82.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 2.3e-98 362.8 213 82.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.3e-98 362.8 259 72.6
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.1e-98 362.5 216 82.4
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 8.9e-98 360.9 226 78.8
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 8.9e-98 360.9 226 78.8
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.9e-98 360.9 236 75.4
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.2e-97 360.5 269 70.6
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.2e-97 360.5 218 80.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.0e-97 359.8 243 73.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-97 359.8 235 75.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-97 359.8 235 75.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-97 359.8 260 70.4
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-97 359.4 249 73.5
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-97 359.0 226 78.3
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 3.4e-97 359.0 226 78.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 4.4e-97 358.6 256 71.5
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 4.4e-97 358.6 256 71.5
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.4e-97 358.6 216 80.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 5.8e-97 358.2 235 75.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 5.8e-97 358.2 265 69.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.8e-97 357.5 260 70.0
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.3e-96 357.1 243 72.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.7e-96 356.7 226 77.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.9e-96 355.9 260 71.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.9e-96 355.9 278 67.6
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.9e-96 355.9 262 70.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 4.9e-96 355.1 214 78.5
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.4e-96 354.8 216 77.8
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 8.3e-96 354.4 237 73.8
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.4e-95 353.6 213 81.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.4e-95 352.8 229 75.5
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 3.2e-95 352.4 216 80.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.2e-95 352.4 218 80.3
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.2e-95 352.4 260 70.4
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 4.1e-95 352.1 209 82.8
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 7.0e-95 351.3 209 82.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.2e-95 350.9 218 78.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.6e-94 350.1 209 82.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 2.7e-94 349.4 217 79.7
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.5e-94 349.0 209 78.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 6.0e-94 348.2 216 76.4
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.3e-93 346.3 216 76.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 8.6e-93 344.4 240 72.1
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 4.3e-92 342.0 209 77.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.3e-92 341.3 277 66.1
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.6e-91 340.1 214 76.6
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.1e-91 339.7 213 78.4
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.7e-91 338.6 217 75.1
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.2e-91 338.2 217 75.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.4e-90 337.0 220 75.0
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-90 336.7 217 78.3
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-90 336.7 217 78.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.3e-90 336.3 217 74.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.1e-90 335.9 214 77.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.1e-90 335.9 274 65.0
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.1e-90 335.9 208 78.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.0e-90 335.5 219 75.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 5.2e-90 335.1 262 67.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 5.2e-90 335.1 223 74.9
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 5.2e-90 335.1 242 69.4
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 6.8e-90 334.7 215 77.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 6.8e-90 334.7 219 75.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.8e-90 334.7 277 63.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.6e-89 332.8 261 64.4
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.6e-89 332.8 238 70.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.4e-89 332.0 214 76.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.4e-89 332.0 214 76.2
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.4e-89 332.0 216 75.0
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 5.8e-89 331.6 275 63.6
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 7.5e-89 331.3 259 66.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 9.9e-89 330.9 254 66.1
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 9.9e-89 330.9 213 75.6
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.3e-88 330.5 229 71.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.7e-88 330.1 244 67.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.2e-88 329.7 215 74.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.7e-88 328.9 224 71.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 6.4e-88 328.2 234 68.4
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 8.3e-88 327.8 215 76.3
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-87 327.4 245 66.5
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.4e-87 327.0 244 65.6
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 3.2e-87 325.9 214 76.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.4e-87 325.1 223 73.1
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.4e-87 325.1 248 68.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.5e-86 322.4 218 73.4
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.6e-86 322.0 242 67.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 6.0e-86 321.6 264 65.9
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.8e-86 321.2 213 74.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 3.3e-84 315.8 213 73.7
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.6e-84 315.1 211 73.9
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 9.5e-84 314.3 267 63.3
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.6e-83 312.4 207 74.4
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.7e-83 312.0 177 83.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-82 310.8 211 72.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.8e-82 308.1 209 70.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.9e-82 307.8 211 71.6
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.9e-80 302.8 223 69.1
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.2e-79 299.3 176 81.2
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 9.2e-79 297.7 173 82.7
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 9.2e-79 297.7 196 74.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-78 297.0 226 65.0
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.5e-78 295.8 226 64.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.5e-78 295.8 226 64.2
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-77 293.9 226 63.7
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-77 293.9 226 63.7
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.3e-77 293.9 226 63.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.7e-77 291.2 214 67.3
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.1e-75 286.6 211 68.2
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 5.1e-69 265.4 206 65.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.3e-64 250.8 140 87.9
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.7e-64 250.4 226 59.3
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.9e-64 249.6 266 54.1
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 3.8e-64 249.2 140 87.1
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.9e-64 248.8 246 57.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.4e-63 247.3 225 59.1
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 7.1e-63 245.0 206 60.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.7e-62 243.0 216 57.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.1e-58 229.6 135 83.7
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.8e-53 213.8 216 53.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-50 204.5 229 50.7
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.1e-50 203.0 216 48.6
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-43 181.0 179 57.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.9e-42 175.3 178 50.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.2e-40 170.2 177 53.7
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.7e-30 136.7 80 82.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.2e-23 112.8 103 58.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.0e-18 95.5 61 70.5
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.9e-15 87.4 89 49.4
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.0e-12 77.4 75 53.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.6e-12 77.0 66 59.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.6e-09 67.8 73 53.4
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 5.9e-09 65.9 81 48.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.0e-08 62.8 40 72.5
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 5.0e-08 62.8 44 70.5


User provided reference genes

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