Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.9e-104 382.5 193 100.0
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 2.9e-60 235.7 142 88.0
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 6.3e-31 138.3 123 61.0
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 7.8e-29 131.3 147 51.0
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 6.1e-26 121.7 149 48.3
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.0e-25 120.9 148 51.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 4.0e-25 119.0 150 50.7
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 6.8e-25 118.2 147 51.0
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 5.8e-24 115.2 151 51.0
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 2.7e-21 106.3 163 42.9
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.3e-20 104.0 152 44.7
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 6.6e-20 101.7 150 46.0
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.5e-19 99.8 153 44.4
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.5e-19 99.8 127 49.6
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 3.3e-19 99.4 147 46.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 4.3e-19 99.0 144 45.8
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 7.3e-19 98.2 117 50.4
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 9.5e-19 97.8 144 45.1
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.2e-18 97.4 118 50.0
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 3.6e-18 95.9 159 43.4
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 6.2e-18 95.1 125 46.4
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.1e-17 94.4 108 54.6
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 2.3e-17 93.2 149 42.3
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 2.3e-17 93.2 153 39.9
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 3.1e-17 92.8 145 42.8
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 3.1e-17 92.8 151 41.1
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 2.0e-16 90.1 152 39.5
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.8e-16 88.6 150 38.0
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.7e-15 87.0 111 48.6
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 2.2e-15 86.7 156 41.7
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 3.7e-15 85.9 148 35.8
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 3.7e-15 85.9 119 43.7
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 4.9e-15 85.5 155 40.0
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 4.9e-15 85.5 152 40.1
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 4.9e-15 85.5 153 41.8
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 6.4e-15 85.1 105 49.5
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 8.3e-15 84.7 101 49.5
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.1e-14 84.3 144 43.8
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 2.4e-14 83.2 115 45.2
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 3.2e-14 82.8 119 42.9
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.2e-14 82.8 89 50.6
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 7.1e-14 81.6 153 41.2
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 7.1e-14 81.6 124 41.1
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 9.2e-14 81.3 68 60.3
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 1.2e-13 80.9 65 63.1
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.2e-13 80.9 151 37.7
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 1.6e-13 80.5 144 38.9
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.6e-13 80.5 152 40.1
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 2.7e-13 79.7 128 48.4
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 4.6e-13 79.0 78 55.1
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 6.0e-13 78.6 149 37.6
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 6.0e-13 78.6 149 37.6
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 6.0e-13 78.6 161 37.9
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 7.8e-13 78.2 103 48.5
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 7.8e-13 78.2 75 56.0
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 1.3e-12 77.4 61 59.0
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.7e-12 77.0 128 42.2
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 3.0e-12 76.3 131 37.4
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.9e-12 75.9 152 36.2
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 3.9e-12 75.9 119 40.3
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 6.6e-12 75.1 60 66.7
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 8.6e-12 74.7 140 42.9
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.1e-11 74.3 137 38.0
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.9e-11 73.6 107 45.8
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.5e-11 73.2 58 63.8
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 2.5e-11 73.2 149 35.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 3.3e-11 72.8 129 41.1
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 3.3e-11 72.8 149 36.2
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 3.3e-11 72.8 149 36.2
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 3.3e-11 72.8 149 36.2
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 3.3e-11 72.8 111 45.0
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 4.3e-11 72.4 68 48.5
QL05p030704 Quercus lobata HOM05D007527 ORTHO05D009523 4.3e-11 72.4 82 52.4
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 5.6e-11 72.0 126 39.7
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 5.6e-11 72.0 105 41.0
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 5.6e-11 72.0 60 60.0
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 7.3e-11 71.6 63 54.0
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 9.5e-11 71.2 60 60.0
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 9.5e-11 71.2 162 34.0
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 9.5e-11 71.2 59 61.0
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.2e-10 70.9 110 47.3
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.2e-10 70.9 110 47.3
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 1.2e-10 70.9 83 49.4
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 1.2e-10 70.9 57 63.2
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.2e-10 70.9 60 56.7
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.6e-10 70.5 57 59.6
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 3.6e-10 69.3 111 42.3
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 4.7e-10 68.9 130 38.5
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 6.2e-10 68.6 122 41.8
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.4e-09 67.4 86 39.5
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.8e-09 67.0 52 61.5
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 1.2e-08 64.3 58 53.4
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 1.5e-08 63.9 59 61.0
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 2.6e-08 63.2 109 40.4
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 2.2e-07 60.1 53 56.6
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 2.9e-07 59.7 68 48.5
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 1.1e-06 57.8 46 60.9
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.1e-06 57.8 46 63.0


User provided reference genes

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