Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001894 Carpinus fangiana HOM05D000273 ORTHO05D000069 6.5e-57 223.8 110 100.0
Cfa013965 Carpinus fangiana HOM05D000273 ORTHO05D000069 3.6e-55 218.0 110 98.2
Cfa004210 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.2e-53 213.0 110 96.4
Cfa004289 Carpinus fangiana HOM05D000273 ORTHO05D000069 3.8e-49 198.0 102 97.1
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 7.8e-42 173.7 97 92.8
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 1.1e-40 169.9 97 90.7
Cfa018494 Carpinus fangiana HOM05D000500 ORTHO05D000367 4.7e-31 137.9 82 85.4
Cfa016016 Carpinus fangiana HOM05D000273 ORTHO05D000198 8.1e-31 137.1 86 82.6
CiPaw.10G029500 Carya illinoinensis HOM05D000194 ORTHO05D000069 5.2e-30 134.4 98 72.4
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 1.7e-28 129.4 77 83.1
CiPaw.09G033800 Carya illinoinensis HOM05D000194 ORTHO05D000069 3.7e-28 128.3 98 70.4
Cfa012215 Carpinus fangiana HOM05D000273 ORTHO05D000069 6.0e-26 120.9 65 90.8
Cfa006267 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.7e-25 119.4 65 89.2
Cfa012493 Carpinus fangiana HOM05D000273 ORTHO05D000069 9.5e-24 113.6 73 80.8
Cpa.g.sc85.120 Carica papaya HOM05D000194 ORTHO05D000069 2.4e-19 99.0 100 59.0
RcHm_v2.0_Chr3g0480751 Rosa chinensis HOM05D000194 ORTHO05D000069 7.1e-19 97.4 97 59.8
QL07p022241 Quercus lobata HOM05D000194 ORTHO05D000069 1.2e-18 96.7 100 61.0
Hma1.2p1_0856F.1_g229080 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 2.7e-18 95.5 98 54.1
TWI77G0641 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 2.7e-18 95.5 97 55.7
MELO3C009653.2 Cucumis melo HOM05D000194 ORTHO05D000069 3.5e-18 95.1 98 59.2
ClCG10G017310 Citrullus lanatus HOM05D000194 ORTHO05D000069 4.6e-18 94.7 100 62.0
CsaV3_3G039100 Cucumis sativus L. HOM05D000194 ORTHO05D000069 4.6e-18 94.7 99 60.6
GSVIVG01033350001 Vitis vinifera HOM05D000194 ORTHO05D000069 4.6e-18 94.7 96 59.4
Prupe.7G070200 Prunus persica HOM05D000194 ORTHO05D000069 1.3e-17 93.2 98 59.2
TAR623G1219 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.9e-17 91.7 91 56.0
MD14G1064200 Malus domestica HOM05D000194 ORTHO05D000069 1.5e-16 89.7 100 56.0
CANSAT80G1730 Cannabis sativa HOM05D000194 ORTHO05D000069 1.9e-16 89.4 101 58.4
TWI53G0530 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 3.6e-15 85.1 95 51.6
arahy.Tifrunner.gnm1.ann1.VUQ1KR Arachis hypogaea HOM05D000194 ORTHO05D000069 1.1e-14 83.6 87 57.5
TAR369G0121 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.8e-14 82.8 95 50.5
arahy.Tifrunner.gnm1.ann1.35WB4A Arachis hypogaea HOM05D000194 ORTHO05D000069 2.4e-14 82.4 87 57.5
Glyma.19G143900 Glycine max HOM05D000194 ORTHO05D000069 3.1e-14 82.0 87 59.8
Atru.chr1.946 Acer truncatum HOM05D000194 ORTHO05D000069 4.0e-14 81.6 103 54.4
Sed0003534 Sechium edule HOM05D000194 ORTHO05D000069 4.0e-14 81.6 98 52.0
Manes.08G047400 Manihot esculenta HOM05D000194 ORTHO05D000069 5.2e-14 81.3 103 51.5
Glyma.03G141200 Glycine max HOM05D000194 ORTHO05D000069 6.9e-14 80.9 98 54.1
MBI01_g40601_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 1.2e-13 80.1 93 55.9
Phvul.001G138200 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 1.5e-13 79.7 96 53.1
Manes.09G030600 Manihot esculenta HOM05D000194 ORTHO05D000069 7.6e-13 77.4 105 52.4
VMungo1383G2350 Vigna mungo HOM05D000194 ORTHO05D000069 7.6e-13 77.4 84 60.7
Lj1g0022078 Lotus japonicus HOM05D000194 ORTHO05D000069 9.9e-13 77.0 94 50.0
TPR.G4765 Trifolium pratense HOM05D000194 ORTHO05D000069 2.2e-12 75.9 83 55.4
Psat3g070440 Pisum sativum HOM05D000194 ORTHO05D000069 4.9e-12 74.7 93 51.6
FAN02G1333 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.1e-11 73.6 97 52.6
Carub.0005s2466 Capsella rubella HOM05D000194 ORTHO05D000069 1.4e-11 73.2 103 46.6
Thhalv10006040m.g Eutrema salsugineum HOM05D000194 ORTHO05D000069 1.4e-11 73.2 103 47.6
MD12G1063900 Malus domestica HOM05D000194 ORTHO05D000069 1.4e-11 73.2 98 53.1
Potri.016G051100 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.9e-11 72.8 97 46.4
Aa31LG10G12540 Aethionema arabicum HOM05D000194 ORTHO05D000069 4.2e-11 71.6 102 46.1
CDE04G0530 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 4.2e-11 71.6 92 44.6
THA.LOC104802378 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 4.2e-11 71.6 100 48.0
Sp5g04890 Schrenkiella parvula HOM05D000194 ORTHO05D000069 5.4e-11 71.2 112 45.5
AL5G39470 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 1.2e-10 70.1 104 48.1
CDE06G0936 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 1.2e-10 70.1 92 48.9
Ca_08492_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.2e-10 70.1 84 57.1
Ca_30035_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.2e-10 70.1 84 57.1
Rhsim03G0010700 Rhododendron simsii HOM05D000194 ORTHO05D000069 1.2e-10 70.1 102 45.1
VMungo0720G2682 Vigna mungo HOM05D000194 ORTHO05D000069 1.2e-10 70.1 116 48.3
AT3G57800 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 1.6e-10 69.7 104 47.1
BcaB02g08293 Brassica carinata HOM05D000194 ORTHO05D000069 1.6e-10 69.7 108 43.5
CDE07G0313 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 1.6e-10 69.7 92 47.8
FAN14G1392 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.1e-10 69.3 97 52.6
Sabra16G0054900 Salix brachista HOM05D000194 ORTHO05D000069 2.1e-10 69.3 98 44.9
Phvul.007G256800 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 2.7e-10 68.9 114 47.4
Medtr7g092510 Medicago truncatula HOM05D000194 ORTHO05D000069 3.5e-10 68.6 99 46.5
vmacro08023 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 3.5e-10 68.6 95 49.5
FvH4_6g22930 Fragaria vesca HOM05D000194 ORTHO05D000069 4.6e-10 68.2 97 51.5
Lalb_Chr25g0287551 Lupinus albus HOM05D000194 ORTHO05D000069 6.0e-10 67.8 85 54.1
Sp4g24470 Schrenkiella parvula HOM05D000194 ORTHO05D000069 6.0e-10 67.8 99 44.4
Ca_12120_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.0e-09 67.0 93 53.8
FAN05G5106 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.3e-09 66.6 97 50.5
Medtr1g059270 Medicago truncatula HOM05D000194 ORTHO05D000069 1.3e-09 66.6 93 46.2
FAN09G1002 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.3e-09 65.9 97 50.5
Lalb_Chr20g0110991 Lupinus albus HOM05D000194 ORTHO05D000069 3.0e-09 65.5 95 49.5
A04p02900 Brassica napus HOM05D000194 ORTHO05D000069 3.9e-09 65.1 107 43.0
BraA04t16013Z Brassica rapa HOM05D000194 ORTHO05D000069 3.9e-09 65.1 107 43.0
DCAR_013568 Daucus carota HOM05D000194 ORTHO05D000069 3.9e-09 65.1 94 45.7
Sabra06G0040300 Salix brachista HOM05D000194 ORTHO05D000069 3.9e-09 65.1 97 46.4
Actinidia09371 Actinidia chinensis HOM05D000194 ORTHO05D000069 5.1e-09 64.7 99 44.4
Sed0022117 Sechium edule HOM05D000194 ORTHO05D000069 8.7e-09 63.9 96 46.9
BcaC08g44869 Brassica carinata HOM05D000194 ORTHO05D000069 1.1e-08 63.5 108 42.6
Nn7g36116 Nelumbo nucifera HOM05D000194 ORTHO05D000069 1.1e-08 63.5 96 45.8
arahy.Tifrunner.gnm1.ann1.Y3DHDC Arachis hypogaea HOM05D000194 ORTHO05D000069 1.5e-08 63.2 109 42.2
CARHR168130 Cardamine hirsuta HOM05D000194 ORTHO05D000069 1.5e-08 63.2 117 43.6
Actinidia20294 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.9e-08 62.8 102 41.2
arahy.Tifrunner.gnm1.ann1.IJCM88 Arachis hypogaea HOM05D000194 ORTHO05D000069 2.5e-08 62.4 109 41.3
BcaC02g09962 Brassica carinata HOM05D000194 ORTHO05D000069 2.5e-08 62.4 107 43.9
C04p34560 Brassica napus HOM05D000194 ORTHO05D000069 2.5e-08 62.4 107 43.9
BolC4t25017H Brassica oleracea HOM05D000194 ORTHO05D000069 2.5e-08 62.4 107 43.9
COL.COLO4_28734 Corchorus olitorius HOM05D000194 ORTHO05D000069 2.5e-08 62.4 102 45.1
Lj2A374G35 Lonicera japonica HOM05D000194 ORTHO05D000069 2.5e-08 62.4 92 44.6
Psat6g072520 Pisum sativum HOM05D000194 ORTHO05D000069 2.5e-08 62.4 88 47.7
AL4G40660 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 4.3e-08 61.6 101 42.6
CSS0046332 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 4.3e-08 61.6 97 47.4
Ciclev10005087m.g Citrus clementina HOM05D000194 ORTHO05D000069 4.3e-08 61.6 135 38.5
MBI04_g42668_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 4.3e-08 61.6 93 44.1
Aa31LG1G23990 Aethionema arabicum HOM05D000194 ORTHO05D000069 7.3e-08 60.8 104 45.2
A07p23690 Brassica napus HOM05D000194 ORTHO05D000069 7.3e-08 60.8 109 42.2
C06p24830 Brassica napus HOM05D000194 ORTHO05D000069 9.6e-08 60.5 108 40.7
BolC6t37636H Brassica oleracea HOM05D000194 ORTHO05D000069 1.3e-07 60.1 108 41.7
AT2G42300 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 2.1e-07 59.3 103 43.7
BraA07t30021Z Brassica rapa HOM05D000194 ORTHO05D000069 2.1e-07 59.3 107 42.1
Carub.0004s2464 Capsella rubella HOM05D000194 ORTHO05D000069 2.1e-07 59.3 99 42.4
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 2.8e-07 58.9 28 89.3
Lalb_Chr01g0017591 Lupinus albus HOM05D000194 ORTHO05D000069 3.6e-07 58.5 97 45.4
Thecc.05G165300 Theobroma cacao HOM05D000194 ORTHO05D000069 3.6e-07 58.5 79 45.6
CARHR137340 Cardamine hirsuta HOM05D000194 ORTHO05D000069 4.8e-07 58.2 101 42.6
Potri.006G057200 Populus trichocarpa HOM05D000194 ORTHO05D000069 4.8e-07 58.2 97 42.3
Oeu018019.1 Olea europaea HOM05D000194 ORTHO05D000069 6.2e-07 57.8 94 43.6
Glyma.10G093600 Glycine max HOM05D000194 ORTHO05D000069 8.1e-07 57.4 81 46.9
EL10Ac3g06983 Beta vulgaris HOM05D000194 ORTHO05D000069 1.1e-06 57.0 90 44.4
Gohir.A11G313800 Gossypium hirsutum HOM05D000194 ORTHO05D000069 2.4e-06 55.8 96 42.7
Gohir.D09G122100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 3.1e-06 55.5 94 40.4
Duzib093G0141 Durio zibethinus HOM05D000194 ORTHO05D000069 4.0e-06 55.1 92 41.3
Gorai.007G361700 Gossypium raimondii HOM05D000194 ORTHO05D000069 4.0e-06 55.1 95 41.1
Sc13g0002040 Simmondsia chinensis HOM05D000194 ORTHO05D000069 4.0e-06 55.1 116 35.3
Cc06_g16420 Coffea canephora HOM05D000194 ORTHO05D000069 5.3e-06 54.7 87 43.7
Gohir.D11G331000 Gossypium hirsutum HOM05D000194 ORTHO05D000069 5.3e-06 54.7 95 41.1
C08p33390 Brassica napus HOM05D000194 ORTHO05D000069 6.9e-06 54.3 97 41.2
Glyma.02G174800 Glycine max HOM05D000194 ORTHO05D000069 9.0e-06 53.9 111 39.6
Gohir.A09G125100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 9.0e-06 53.9 92 40.2


User provided reference genes

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