Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 3.8e-93 344.7 165 100.0
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 4.8e-80 301.2 166 84.3
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.1e-79 300.1 165 82.4
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 2.4e-79 298.9 165 84.2
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 5.4e-79 297.7 165 80.6
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 9.1e-79 297.0 165 81.2
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 79.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 82.4
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 80.6
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 82.4
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 3.5e-78 295.0 161 82.6
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 3.5e-78 295.0 165 79.4
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 4.5e-78 294.7 165 80.0
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 7.7e-78 293.9 161 82.0
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 7.7e-78 293.9 165 80.0
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 7.7e-78 293.9 165 80.0
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 7.7e-78 293.9 165 81.2
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 7.7e-78 293.9 161 82.6
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 1.0e-77 293.5 165 80.0
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.0e-77 293.5 165 78.8
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.0e-77 293.5 165 78.8
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 80.0
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 81.2
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 1.7e-77 292.7 165 79.4
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 1.7e-77 292.7 165 79.4
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.7e-77 292.7 161 80.1
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 2.9e-77 292.0 161 80.1
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 3.8e-77 291.6 166 79.5
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 80.0
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 80.0
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 6.5e-77 290.8 165 79.4
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 6.5e-77 290.8 165 79.4
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 80.6
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 1.1e-76 290.0 161 80.7
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.5e-76 289.7 165 77.6
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 166 79.5
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 79.4
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 77.6
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 80.6
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 77.6
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 79.4
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 1.6e-75 286.2 165 77.6
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 1.6e-75 286.2 163 77.9
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 1.6e-75 286.2 161 80.1
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 2.7e-75 285.4 161 78.9
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 77.6
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 3.6e-75 285.0 161 78.9
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 8.0e-75 283.9 165 78.2
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 77.0
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 1.4e-74 283.1 161 77.6
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 2.3e-74 282.3 161 77.0
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 3.0e-74 282.0 165 77.0
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 3.0e-74 282.0 161 78.3
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 77.0
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 77.0
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 6.8e-74 280.8 161 76.4
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 6.8e-74 280.8 164 77.4
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 74.5
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 1.5e-73 279.6 262 58.0
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 76.4
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 2.0e-73 279.3 166 75.3
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.6e-73 278.9 164 76.2
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 76.4
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 3.4e-73 278.5 161 77.0
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 73.9
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 7.5e-73 277.3 161 75.8
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 7.5e-73 277.3 161 77.6
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 1.3e-72 276.6 161 77.0
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 4.9e-72 274.6 161 75.2
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 1.1e-71 273.5 161 75.2
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 1.8e-71 272.7 161 75.2
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 2.0e-70 269.2 165 75.2
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 2.7e-70 268.9 164 73.8
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 7.7e-70 267.3 165 72.1
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 1.0e-69 266.9 158 76.6
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 2.9e-69 265.4 161 73.3
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 6.6e-69 264.2 161 73.3
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 1.0e-66 256.9 165 73.3
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 3.0e-66 255.4 144 77.8
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 4.4e-65 251.5 162 70.4
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 9.8e-65 250.4 161 67.1
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.7e-64 249.6 165 70.3
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 8.6e-61 237.3 197 58.9
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 2.9e-56 222.2 126 79.4
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 3.2e-55 218.8 117 82.9
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.5e-52 209.1 166 59.6
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 4.3e-52 208.4 140 65.7
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 1.2e-49 200.3 113 83.2
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 1.5e-49 199.9 159 55.3
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.0e-49 199.5 159 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 2.6e-49 199.1 157 56.7
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 1.0e-45 187.2 164 53.7
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 3.6e-35 152.1 91 73.6
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 8.1e-35 151.0 83 78.3
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 1.1e-34 150.6 82 80.5
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.4e-34 150.2 79 83.5
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 2.4e-34 149.4 80 85.0
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.2e-33 147.1 82 76.8
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 1.3e-32 143.7 82 76.8
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 2.2e-32 142.9 91 65.9
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 1.2e-30 137.1 83 73.5
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 6.0e-30 134.8 82 72.0
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 2.3e-29 132.9 82 68.3
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.8e-26 123.2 94 61.7
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 1.2e-17 94.0 71 69.0
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 7.4e-12 74.7 43 76.7


User provided reference genes

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