Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 4.9e-224 780.8 391 100.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 3.7e-219 764.6 391 97.7
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.8e-186 656.0 392 84.7
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 7.5e-172 607.4 389 81.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 9.5e-167 590.5 390 77.9
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 8.0e-166 587.4 353 81.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 4.0e-165 585.1 395 77.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 6.8e-165 584.3 398 76.4
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.6e-164 582.4 395 77.2
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.6e-164 582.4 391 77.2
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 3.4e-164 582.0 382 77.5
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.4e-164 581.6 392 76.8
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 5.7e-164 581.3 372 80.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 5.7e-164 581.3 385 76.1
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 3.7e-163 578.6 387 77.3
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 4.9e-163 578.2 391 77.2
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-162 577.0 401 75.1
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-162 576.6 400 75.2
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.4e-162 575.9 348 82.8
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 2.4e-162 575.9 394 75.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 5.4e-162 574.7 390 75.9
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.2e-162 573.9 399 74.9
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.2e-161 573.5 394 74.9
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.0e-161 572.8 394 74.9
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 4.6e-161 571.6 393 75.6
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.8e-161 570.9 394 74.6
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 7.8e-161 570.9 391 74.9
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.3e-160 570.1 398 73.4
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.3e-160 570.1 377 76.7
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.9e-160 568.9 376 78.7
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.9e-160 568.5 378 76.5
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.9e-159 566.2 399 73.9
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.5e-159 565.8 373 76.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.6e-158 563.1 395 73.4
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 4.7e-158 561.6 393 73.8
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 6.2e-158 561.2 418 71.1
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.4e-157 560.1 330 82.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.8e-157 559.7 396 73.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 8.9e-157 557.4 333 82.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 5.8e-156 554.7 376 74.2
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.8e-156 554.7 363 76.0
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.3e-155 553.5 389 73.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.7e-155 553.1 329 82.1
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.9e-155 552.4 396 72.5
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.9e-155 551.6 322 83.9
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 6.4e-155 551.2 363 74.4
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 8.3e-155 550.8 389 72.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.4e-154 549.3 365 75.1
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.4e-154 549.3 339 78.8
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 2.4e-154 549.3 376 73.1
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 9.2e-154 547.4 394 73.4
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.2e-153 547.0 371 75.7
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.0e-153 546.2 388 72.4
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 2.7e-153 545.8 344 78.5
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.7e-153 545.8 322 82.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.7e-153 545.8 375 76.3
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 6.0e-153 544.7 322 82.9
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.3e-152 543.5 322 82.0
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.3e-152 542.7 359 74.7
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 2.3e-152 542.7 322 82.3
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.0e-152 542.3 339 78.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.9e-152 542.0 385 71.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 8.6e-152 540.8 386 71.5
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 8.6e-152 540.8 388 71.4
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 8.6e-152 540.8 390 71.0
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.5e-151 540.0 319 82.4
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.5e-151 540.0 319 82.4
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.5e-151 540.0 319 82.4
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.5e-151 540.0 338 80.5
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 9.5e-151 537.3 322 81.4
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.6e-150 536.6 322 78.9
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 3.6e-150 535.4 395 71.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 4.7e-150 535.0 361 72.3
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 6.2e-150 534.6 394 68.5
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.8e-149 533.1 394 70.1
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.6e-148 529.3 391 71.9
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 5.8e-148 528.1 276 94.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 9.8e-148 527.3 387 68.5
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.2e-147 526.2 391 68.8
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 2.1e-145 519.6 378 70.4
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 5.1e-144 515.0 393 66.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.6e-142 510.0 316 78.2
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 3.4e-140 502.3 390 65.1
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 9.9e-140 500.7 354 74.3
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.7e-136 490.0 381 67.2
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 1.1e-133 480.7 268 86.9
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 6.8e-133 478.0 276 82.6
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.2e-129 467.2 384 65.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 6.2e-126 454.9 281 81.1
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.8e-125 453.4 261 85.4
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 9.0e-125 451.1 267 80.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.2e-121 440.7 314 65.3
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 8.7e-120 434.5 318 64.5
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.2e-118 428.3 268 75.0
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.7e-115 420.2 319 62.7
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.6e-113 413.7 301 73.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 8.7e-112 407.9 318 60.7
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-109 400.6 272 74.3
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 6.9e-109 398.3 268 74.6
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.5e-108 395.6 287 72.8
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.1e-102 376.7 290 67.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.1e-93 347.8 229 75.5
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 6.3e-86 322.0 267 68.2
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 2.6e-79 300.1 267 61.4
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 8.5e-75 285.0 240 65.0
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 6.7e-72 275.4 311 46.3
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.6e-71 273.5 320 42.5
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.6e-71 273.5 320 42.5
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 2.6e-71 273.5 344 42.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.4e-69 267.7 165 77.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.0e-67 259.2 154 80.5
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-64 251.1 166 77.1
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.6e-60 237.7 130 87.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 3.2e-37 160.2 91 82.4
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 7.0e-37 159.1 406 30.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-33 148.3 100 68.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.2e-28 131.7 75 77.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.6e-28 131.3 79 77.2
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 7.8e-28 129.0 90 70.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 4.9e-22 109.8 83 61.4
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 6.4e-22 109.4 105 56.2
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 6.6e-19 99.4 74 70.3
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 6.2e-17 92.8 125 54.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 8.1e-17 92.4 54 81.5
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 5.2e-16 89.7 58 75.9
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 5.2e-16 89.7 58 82.8
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 2.6e-15 87.4 116 53.4
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.9e-14 84.0 51 72.5
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.9e-14 84.0 51 72.5
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 7.1e-13 79.3 95 48.4
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 2.1e-12 77.8 47 76.6
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.7e-12 77.4 74 58.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.0e-11 75.5 296 27.0
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 2.3e-11 74.3 295 29.2
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 3.9e-11 73.6 164 35.4
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 6.6e-11 72.8 69 55.1
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 5.6e-10 69.7 282 27.3
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 5.6e-10 69.7 75 50.7
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 9.6e-10 68.9 290 28.3
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 9.6e-10 68.9 290 26.2
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 2.1e-09 67.8 42 78.6
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.6e-09 67.0 292 26.0
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 3.6e-09 67.0 292 25.7
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 8.1e-09 65.9 293 25.9
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.1e-08 65.5 298 25.2
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 1.8e-08 64.7 303 27.1
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.8e-08 64.7 295 26.4
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.4e-08 64.3 300 25.3
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 3.1e-08 63.9 80 45.0
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 9.0e-08 62.4 301 26.2
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.5e-07 61.6 298 25.8
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.5e-07 61.6 285 24.9
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 2.0e-07 61.2 298 25.5
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 2.0e-07 61.2 327 26.0
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.0e-07 61.2 299 24.7
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.4e-07 60.5 359 24.8
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 3.4e-07 60.5 298 25.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 5.8e-07 59.7 284 25.0
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.3e-06 58.5 289 25.6
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 1.7e-06 58.2 284 23.9
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.2e-06 57.8 297 24.2
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.9e-06 57.4 272 25.7
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.9e-06 57.4 344 25.0
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.8e-06 57.0 344 24.7
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.8e-06 57.0 344 24.7
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 4.9e-06 56.6 344 24.7


User provided reference genes

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