Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001871 Carpinus fangiana HOM05D003458 ORTHO05D003854 1.2e-55 219.9 134 100.0
Haze_16677 Corylus avellana HOM05D003458 ORTHO05D003854 8.0e-49 197.2 125 80.0
Manes.11G068500 Manihot esculenta HOM05D003458 ORTHO05D003854 5.2e-40 167.9 100 80.0
Prupe.3G100300 Prunus persica HOM05D003458 ORTHO05D003854 9.8e-39 163.7 157 57.3
CiPaw.02G162800 Carya illinoinensis HOM05D003458 ORTHO05D003854 1.3e-38 163.3 151 60.3
CiPaw.01G255600 Carya illinoinensis HOM05D003458 ORTHO05D003854 7.0e-37 157.5 159 68.6
Thecc.06G043800 Theobroma cacao HOM05D003458 ORTHO05D003854 7.0e-37 157.5 124 64.5
QL05p036319 Quercus lobata HOM05D003458 ORTHO05D003854 9.2e-37 157.1 159 62.9
FvH4_6g28480 Fragaria vesca HOM05D003458 ORTHO05D003854 1.6e-36 156.4 157 54.8
Dinv23277 Davidia involucrata HOM05D003458 ORTHO05D003854 4.6e-36 154.8 127 65.4
FAN14G3070 Fragaria x ananassa HOM05D003458 ORTHO05D003854 5.9e-36 154.5 124 62.9
Glyma.07G021800 Glycine max HOM05D003458 ORTHO05D003854 7.8e-36 154.1 158 53.8
RcHm_v2.0_Chr2g0132701 Rosa chinensis HOM05D003458 ORTHO05D003854 1.3e-35 153.3 157 53.5
FAN02G0674 Fragaria x ananassa HOM05D003458 ORTHO05D003854 1.7e-35 152.9 156 54.5
CANSAT56G4248 Cannabis sativa HOM05D003458 ORTHO05D003854 2.9e-35 152.1 129 62.0
Hma1.2p1_0109F.1_g052660 Hydrangea macrophylla HOM05D003458 ORTHO05D003854 5.0e-35 151.4 125 63.2
MD09G1225800 Malus domestica HOM05D003458 ORTHO05D003854 8.6e-35 150.6 124 62.9
FAN05G3986 Fragaria x ananassa HOM05D003458 ORTHO05D003854 1.5e-34 149.8 156 53.2
Dinv21418 Davidia involucrata HOM05D003458 ORTHO05D003854 3.3e-34 148.7 127 63.0
MELO3C026732.2 Cucumis melo HOM05D003458 ORTHO05D003854 4.3e-34 148.3 120 64.2
PGSC0003DMG400014210 Solanum tuberosum HOM05D003458 ORTHO05D003854 4.3e-34 148.3 124 62.9
Lj3g0007846 Lotus japonicus HOM05D003458 ORTHO05D003854 7.3e-34 147.5 158 52.5
Sabra03G0134200 Salix brachista HOM05D003458 ORTHO05D003854 7.3e-34 147.5 122 65.6
CSS0014583 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 9.5e-34 147.1 130 63.1
CAN.G407.1 Capsicum annuum HOM05D003458 ORTHO05D003854 9.5e-34 147.1 124 62.1
Potri.003G183700 Populus trichocarpa HOM05D003458 ORTHO05D003854 1.2e-33 146.7 122 64.8
Solyc03g117590.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 1.2e-33 146.7 124 62.1
Sopen03g036500 Solanum pennellii HOM05D003458 ORTHO05D003854 1.2e-33 146.7 124 62.1
TWI12G1059 Tripterygium wilfordii HOM05D003458 ORTHO05D003854 2.1e-33 146.0 128 61.7
MD17G1224600 Malus domestica HOM05D003458 ORTHO05D003854 2.8e-33 145.6 160 51.9
Manes.04G101600 Manihot esculenta HOM05D003458 ORTHO05D003854 3.6e-33 145.2 127 62.2
TAR383G0585 Trochodendron aralioides HOM05D003458 ORTHO05D003854 6.2e-33 144.4 120 64.2
Cc04_g05210 Coffea canephora HOM05D003458 ORTHO05D003854 1.0e-32 143.7 120 60.8
CAN.G1932.6 Capsicum annuum HOM05D003458 ORTHO05D003854 1.4e-32 143.3 119 61.3
Eucgr.J03121 Eucalyptus grandis HOM05D003458 ORTHO05D003854 1.4e-32 143.3 161 49.1
Gohir.D05G119000 Gossypium hirsutum HOM05D003458 ORTHO05D003854 1.4e-32 143.3 126 60.3
Gorai.009G122900 Gossypium raimondii HOM05D003458 ORTHO05D003854 1.4e-32 143.3 126 60.3
arahy.Tifrunner.gnm1.ann1.RZ8KW2 Arachis hypogaea HOM05D003458 ORTHO05D003854 3.1e-32 142.1 123 61.0
Sed0021285 Sechium edule HOM05D003458 ORTHO05D003854 3.1e-32 142.1 127 61.4
arahy.Tifrunner.gnm1.ann1.52HH2Q Arachis hypogaea HOM05D003458 ORTHO05D003854 4.0e-32 141.7 126 57.9
arahy.Tifrunner.gnm1.ann1.BDT6Z1 Arachis hypogaea HOM05D003458 ORTHO05D003854 4.0e-32 141.7 126 57.9
Eucgr.F03977 Eucalyptus grandis HOM05D003458 ORTHO05D003854 6.8e-32 141.0 121 59.5
Atru.chr1.2783 Acer truncatum HOM05D003458 ORTHO05D003854 1.5e-31 139.8 127 59.8
MSTRG.22803 Avicennia marina HOM05D003458 ORTHO05D003854 1.5e-31 139.8 120 57.5
Sabra01G0029600 Salix brachista HOM05D003458 ORTHO05D003854 1.5e-31 139.8 121 62.8
TWI18G0048 Tripterygium wilfordii HOM05D003458 ORTHO05D003854 1.5e-31 139.8 128 58.6
VMungo0331G1722 Vigna mungo HOM05D003458 ORTHO05D003854 1.5e-31 139.8 157 52.2
Eucgr.F03971 Eucalyptus grandis HOM05D003458 ORTHO05D003854 2.0e-31 139.4 119 59.7
Cpa.g.sc362.2 Carica papaya HOM05D003458 ORTHO05D003854 2.6e-31 139.0 124 60.5
Gohir.A05G118300 Gossypium hirsutum HOM05D003458 ORTHO05D003854 2.6e-31 139.0 126 60.3
Lalb_Chr01g0012021 Lupinus albus HOM05D003458 ORTHO05D003854 2.6e-31 139.0 127 59.1
Glyma.08G220000 Glycine max HOM05D003458 ORTHO05D003854 3.4e-31 138.7 120 60.0
Sed0018915 Sechium edule HOM05D003458 ORTHO05D003854 5.8e-31 137.9 112 61.6
Ciclev10026659m.g Citrus clementina HOM05D003458 ORTHO05D003854 7.5e-31 137.5 127 59.8
PGR102G2985 Punica granatum HOM05D003458 ORTHO05D003854 7.5e-31 137.5 121 58.7
MSTRG.9399 Avicennia marina HOM05D003458 ORTHO05D003854 9.8e-31 137.1 121 61.2
ClCG10G012870 Citrullus lanatus HOM05D003458 ORTHO05D003854 9.8e-31 137.1 128 56.2
PGSC0003DMG400028488 Solanum tuberosum HOM05D003458 ORTHO05D003854 9.8e-31 137.1 121 61.2
Lalb_Chr25g0278771 Lupinus albus HOM05D003458 ORTHO05D003854 1.3e-30 136.7 131 57.3
Potri.001G043100 Populus trichocarpa HOM05D003458 ORTHO05D003854 1.3e-30 136.7 121 62.0
TAR636G1057 Trochodendron aralioides HOM05D003458 ORTHO05D003854 1.3e-30 136.7 117 59.8
TAR625G0694 Trochodendron aralioides HOM05D003458 ORTHO05D003854 1.7e-30 136.3 124 60.5
HanXRQChr16g0499401 Helianthus annuus HOM05D003458 ORTHO05D003854 4.9e-30 134.8 124 58.9
arahy.Tifrunner.gnm1.ann1.A1Q64B Arachis hypogaea HOM05D003458 ORTHO05D003854 6.4e-30 134.4 139 54.7
arahy.Tifrunner.gnm1.ann1.VHV24A Arachis hypogaea HOM05D003458 ORTHO05D003854 6.4e-30 134.4 139 54.7
Lsat_1_v5_gn_4_86780 Lactuca sativa HOM05D003458 ORTHO05D003854 6.4e-30 134.4 125 57.6
MSTRG.11188 Avicennia marina HOM05D003458 ORTHO05D003854 1.1e-29 133.7 120 57.5
Duzib160G0069 Durio zibethinus HOM05D003458 ORTHO05D003854 1.1e-29 133.7 125 56.0
Sopen06g025750 Solanum pennellii HOM05D003458 ORTHO05D003854 1.1e-29 133.7 121 59.5
HanXRQChr09g0274111 Helianthus annuus HOM05D003458 ORTHO05D003854 1.9e-29 132.9 127 57.5
Solyc06g068500.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 2.4e-29 132.5 121 58.7
Lsat_1_v5_gn_4_86800 Lactuca sativa HOM05D003458 ORTHO05D003854 4.1e-29 131.7 125 56.0
ECA232G4261 Erigeron canadensis HOM05D003458 ORTHO05D003854 9.2e-29 130.6 127 55.1
PGR031G3767 Punica granatum HOM05D003458 ORTHO05D003854 1.2e-28 130.2 131 57.3
PGR037G0008 Punica granatum HOM05D003458 ORTHO05D003854 1.2e-28 130.2 131 57.3
GSVIVG01015991001 Vitis vinifera HOM05D003458 ORTHO05D003854 1.6e-28 129.8 125 57.6
Duzib235G1193 Durio zibethinus HOM05D003458 ORTHO05D003854 2.0e-28 129.4 125 54.4
Lj3g0014635 Lotus japonicus HOM05D003458 ORTHO05D003854 2.0e-28 129.4 158 50.0
Oeu004558.1 Olea europaea HOM05D003458 ORTHO05D003854 2.7e-28 129.0 153 49.0
Medtr4g007300 Medicago truncatula HOM05D003458 ORTHO05D003854 3.5e-28 128.6 132 53.8
Hma1.2p1_0329F.1_g127190 Hydrangea macrophylla HOM05D003458 ORTHO05D003854 4.6e-28 128.3 110 60.0
Peaxi162Scf00207g00438 Petunia axillaris HOM05D003458 ORTHO05D003854 6.0e-28 127.9 122 56.6
COL.COLO4_26747 Corchorus olitorius HOM05D003458 ORTHO05D003854 1.0e-27 127.1 124 58.9
Lsat_1_v5_gn_1_30900 Lactuca sativa HOM05D003458 ORTHO05D003854 1.0e-27 127.1 123 54.5
Oeu018279.2 Olea europaea HOM05D003458 ORTHO05D003854 1.3e-27 126.7 118 60.2
MBI14_g09104_MAGBIO Magnolia biondii HOM05D003458 ORTHO05D003854 1.7e-27 126.3 125 56.8
unitig_61.g26225 Utricularia gibba HOM05D003458 ORTHO05D003854 1.7e-27 126.3 116 57.8
Aa31LG4G1230 Aethionema arabicum HOM05D003458 ORTHO05D003854 2.3e-27 125.9 121 52.1
Nitab4.5_0008962g0050 Nicotiana tabacum HOM05D003458 ORTHO05D003854 2.3e-27 125.9 110 60.9
HanXRQChr02g0034051 Helianthus annuus HOM05D003458 ORTHO05D003854 3.9e-27 125.2 127 52.8
Duzib235G0945 Durio zibethinus HOM05D003458 ORTHO05D003854 6.6e-27 124.4 125 53.6
THA.LOC104812418 Tarenaya hassleriana HOM05D003458 ORTHO05D003854 1.1e-26 123.6 114 55.3
PSO017G5603 Papaver somniferum HOM05D003458 ORTHO05D003854 1.5e-26 123.2 124 54.0
Migut.I00685 Erythranthe guttata HOM05D003458 ORTHO05D003854 3.3e-26 122.1 121 54.5
Nitab4.5_0000886g0060 Nicotiana tabacum HOM05D003458 ORTHO05D003854 3.3e-26 122.1 110 59.1
SalBow6G5477 Salvia bowleyana HOM05D003458 ORTHO05D003854 3.3e-26 122.1 119 56.3
MBI15_g18233_MAGBIO Magnolia biondii HOM05D003458 ORTHO05D003854 7.3e-26 120.9 129 53.5
PSO063G6005 Papaver somniferum HOM05D003458 ORTHO05D003854 9.5e-26 120.6 124 52.4
EL10Ac5g11419 Beta vulgaris HOM05D003458 ORTHO05D003854 2.8e-25 119.0 127 52.8
ECA247G3925 Erigeron canadensis HOM05D003458 ORTHO05D003854 2.8e-25 119.0 111 55.0
Aqoxy7G03379 Aquilegia oxysepala HOM05D003458 ORTHO05D003854 1.1e-24 117.1 127 54.3
DCAR_016307 Daucus carota HOM05D003458 ORTHO05D003854 1.1e-24 117.1 128 50.8
DCAR_016308 Daucus carota HOM05D003458 ORTHO05D003854 1.1e-24 117.1 128 50.8
Ca_06645_v3 Cicer arietinum L. HOM05D003458 ORTHO05D003854 1.8e-24 116.3 124 51.6
Actinidia25473 Actinidia chinensis HOM05D003458 ORTHO05D003854 5.2e-24 114.8 122 54.1
unitig_0.g1100 Utricularia gibba HOM05D003458 ORTHO05D003854 5.2e-24 114.8 125 51.2
Actinidia18254 Actinidia chinensis HOM05D003458 ORTHO05D003854 1.2e-23 113.6 120 55.0
DCAR_025553 Daucus carota HOM05D003458 ORTHO05D003854 2.6e-23 112.5 112 52.7
AUR62029843 Chenopodium quinoa HOM05D003458 ORTHO05D003854 4.4e-23 111.7 127 51.2
Sp5g34820 Schrenkiella parvula HOM05D003458 ORTHO05D003854 9.8e-23 110.5 122 50.0
Phvul.010G162600 Phaseolus vulgaris HOM05D003458 ORTHO05D003854 1.3e-22 110.2 156 41.7
ATR0580G394 Amborella trichopoda HOM05D003458 ORTHO05D003854 1.7e-22 109.8 118 50.8
BcaB05g25215 Brassica carinata HOM05D003458 ORTHO05D003854 2.2e-22 109.4 122 50.0
AUR62025872 Chenopodium quinoa HOM05D003458 ORTHO05D003854 2.9e-22 109.0 127 50.4
Ah.01g016990 Amaranthus hybridus HOM05D003458 ORTHO05D003854 4.9e-22 108.2 116 52.6
arahy.Tifrunner.gnm1.ann1.HTFE1H Arachis hypogaea HOM05D003458 ORTHO05D003854 8.3e-22 107.5 68 73.5
BolC2t09685H Brassica oleracea HOM05D003458 ORTHO05D003854 1.1e-21 107.1 122 47.5
A02p23060 Brassica napus HOM05D003458 ORTHO05D003854 1.4e-21 106.7 122 46.7
BraA02t07304Z Brassica rapa HOM05D003458 ORTHO05D003854 1.4e-21 106.7 122 46.7
BcaC08g45347 Brassica carinata HOM05D003458 ORTHO05D003854 1.9e-21 106.3 122 47.5
A07p26930 Brassica napus HOM05D003458 ORTHO05D003854 1.9e-21 106.3 122 47.5
C06p29610 Brassica napus HOM05D003458 ORTHO05D003854 1.9e-21 106.3 122 47.5
BolC6t38126H Brassica oleracea HOM05D003458 ORTHO05D003854 1.9e-21 106.3 122 47.5
BraA07t30338Z Brassica rapa HOM05D003458 ORTHO05D003854 1.9e-21 106.3 122 47.5
Thhalv10019250m.g Eutrema salsugineum HOM05D003458 ORTHO05D003854 2.4e-21 105.9 119 50.4
C02p36810 Brassica napus HOM05D003458 ORTHO05D003854 3.2e-21 105.5 122 46.7
BcaB02g08712 Brassica carinata HOM05D003458 ORTHO05D003854 7.1e-21 104.4 122 46.7
A07p44770 Brassica napus HOM05D003458 ORTHO05D003854 7.1e-21 104.4 122 46.7
BraA07t31985Z Brassica rapa HOM05D003458 ORTHO05D003854 7.1e-21 104.4 122 46.7
arahy.Tifrunner.gnm1.ann1.9XRG1B Arachis hypogaea HOM05D003458 ORTHO05D003854 1.2e-20 103.6 63 74.6
Psat7g263240 Pisum sativum HOM05D003458 ORTHO05D003854 1.2e-20 103.6 135 47.4
arahy.Tifrunner.gnm1.ann1.G8IK15 Arachis hypogaea HOM05D003458 ORTHO05D003854 1.6e-20 103.2 64 73.4
BcaC08g47535 Brassica carinata HOM05D003458 ORTHO05D003854 2.1e-20 102.8 122 45.9
BolC6t40375H Brassica oleracea HOM05D003458 ORTHO05D003854 2.1e-20 102.8 122 45.9
CARHR073560 Cardamine hirsuta HOM05D003458 ORTHO05D003854 2.1e-20 102.8 114 49.1
C06p53590 Brassica napus HOM05D003458 ORTHO05D003854 6.0e-20 101.3 122 45.1
CDE02G3149 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 6.0e-20 101.3 119 51.3
Actinidia08942 Actinidia chinensis HOM05D000470 ORTHO05D003854 7.8e-20 100.9 120 50.0
CDE04G0124 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 1.7e-19 99.8 119 50.4
Peaxi162Scf00553g00055 Petunia axillaris HOM05D003458 ORTHO05D003854 8.6e-19 97.4 115 50.4
CsaV3_3G032720 Cucumis sativus L. HOM05D003458 ORTHO05D003854 1.5e-18 96.7 112 50.0
BcaC03g15919 Brassica carinata HOM05D003458 ORTHO05D003854 4.3e-18 95.1 120 45.0
Migut.D01129 Erythranthe guttata HOM05D003458 ORTHO05D003854 5.6e-18 94.7 123 46.3
CsaV3_3G032730 Cucumis sativus L. HOM05D003458 ORTHO05D003854 1.2e-17 93.6 118 48.3
ECA246G2335 Erigeron canadensis HOM05D003458 ORTHO05D003854 4.7e-17 91.7 118 44.1
Nitab4.5_0002700g0120 Nicotiana tabacum HOM05D003458 ORTHO05D003854 8.1e-17 90.9 125 45.6
TPR.G3351 Trifolium pratense HOM05D003458 ORTHO05D003854 1.1e-16 90.5 119 47.9
Nitab4.5_0009867g0010 Nicotiana tabacum HOM05D003458 ORTHO05D003854 5.2e-16 88.2 125 44.8
BcaB02g07239 Brassica carinata HOM05D003458 ORTHO05D003854 1.1e-13 80.5 121 39.7
vmacro16847 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 4.1e-13 78.6 127 44.1
vmacro16846 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 9.2e-13 77.4 127 44.1
AL2G40460 Arabidopsis lyrata HOM05D003458 ORTHO05D003854 3.3e-10 68.9 118 39.0
AT1G80920 Arabidopsis thaliana HOM05D003458 ORTHO05D003854 3.3e-10 68.9 118 39.0
Mapoly0124s0043 Marchantia polymorpha HOM05D003458 ORTHO05D003854 5.6e-10 68.2 107 37.4
Rhsim12G0184600 Rhododendron simsii HOM05D003458 ORTHO05D003854 1.2e-09 67.0 114 41.2
Carub.0002s2662 Capsella rubella HOM05D003458 ORTHO05D003854 2.8e-09 65.9 121 38.0
arahy.Tifrunner.gnm1.ann1.NIPD93 Arachis hypogaea HOM05D003458 ORTHO05D003854 4.7e-09 65.1 95 49.5
Rhsim12G0186500 Rhododendron simsii HOM05D003458 ORTHO05D003854 4.7e-09 65.1 114 40.4
SEGI_25751 Sequoiadendron giganteum HOM05D003458 ORTHO05D003854 1.8e-08 63.2 124 37.1
Mapoly0004s0037 Marchantia polymorpha HOM05D003458 ORTHO05D003854 4.0e-08 62.0 122 35.2
Hund02413 Selenicereus undatus HOM05D003458 ORTHO05D003854 8.9e-08 60.8 99 41.4
Pp3c4_26000 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.6e-07 59.3 115 30.4
CSS0041792 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 3.4e-07 58.9 67 52.2
CSS0042256 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 3.4e-07 58.9 67 52.2
SGA_v2.0_scaffold5G02794 Striga asiatica HOM05D000537 ORTHO05D000415 9.9e-07 57.4 92 43.5
CSS0012292 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 1.7e-06 56.6 67 50.7
Pp3c4_11750 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.9e-06 55.8 115 31.3


User provided reference genes

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