Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.1e-135 485.7 250 100.0
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.8e-76 288.9 154 98.7
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.7e-74 282.7 178 82.6
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.5e-72 276.9 172 83.7
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.1e-71 273.1 183 79.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.1e-70 270.8 176 79.5
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.4e-70 269.6 179 82.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.0e-70 268.9 183 79.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 9.0e-70 267.7 178 79.2
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 9.0e-70 267.7 219 68.9
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.7e-68 263.5 178 78.7
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.9e-68 262.7 176 77.8
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 8.4e-68 261.2 176 77.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 8.4e-68 261.2 183 76.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.4e-67 259.6 178 77.0
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 5.5e-67 258.5 178 78.1
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 5.5e-67 258.5 183 76.0
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 7.1e-67 258.1 180 77.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-66 256.9 180 77.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-66 256.9 179 76.0
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.7e-66 256.1 180 77.2
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 7.9e-66 254.6 180 77.2
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.3e-65 253.1 176 76.1
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 5.6e-64 248.4 180 75.6
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.8e-63 246.1 181 76.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 2.4e-62 243.0 178 72.5
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.1e-62 242.7 202 66.3
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 4.0e-62 242.3 181 75.1
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 5.3e-62 241.9 155 80.0
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 9.0e-62 241.1 197 67.0
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.5e-61 240.4 177 74.0
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 2.0e-61 240.0 216 61.6
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.6e-61 239.6 184 72.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 3.4e-61 239.2 190 68.9
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.4e-61 239.2 209 63.6
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 4.5e-61 238.8 178 69.7
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 4.5e-61 238.8 180 72.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 5.8e-61 238.4 178 73.0
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.6e-61 238.0 156 80.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.0e-60 237.7 185 70.8
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-60 237.3 225 60.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.3e-60 237.3 175 73.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.7e-60 236.9 166 77.7
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.7e-60 236.9 147 81.6
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 2.9e-60 236.1 168 73.8
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 2.9e-60 236.1 185 69.7
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 3.8e-60 235.7 165 76.4
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.8e-60 235.7 197 66.5
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 4.9e-60 235.3 214 62.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 6.5e-60 235.0 179 73.7
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 8.4e-60 234.6 176 72.2
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.1e-59 234.2 223 62.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.4e-59 233.8 174 73.0
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.4e-59 233.8 191 67.5
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.5e-59 233.0 196 68.4
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.2e-59 232.6 180 70.0
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 9.3e-59 231.1 218 64.2
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 9.3e-59 231.1 175 69.1
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.7e-58 229.6 164 73.2
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 2.7e-58 229.6 182 69.2
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.6e-58 228.8 176 67.6
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.0e-58 228.4 167 71.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.3e-57 227.3 173 68.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.3e-57 227.3 180 68.3
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.3e-57 227.3 173 68.2
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.3e-57 227.3 167 70.7
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.8e-57 226.9 157 74.5
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.0e-57 226.1 179 69.8
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.9e-57 225.7 220 60.9
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 5.1e-57 225.3 178 69.1
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 1.1e-56 224.2 172 69.2
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.1e-56 224.2 162 72.8
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.1e-56 224.2 211 61.6
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.5e-56 223.0 220 60.5
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 2.5e-56 223.0 211 61.1
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 4.3e-56 222.2 181 68.5
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 4.3e-56 222.2 181 68.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 5.7e-56 221.9 159 74.2
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 9.6e-56 221.1 165 71.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.3e-55 220.7 171 69.0
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-55 219.5 224 59.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 2.8e-55 219.5 174 70.1
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.8e-55 219.5 176 68.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 3.7e-55 219.2 222 56.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.7e-55 219.2 181 67.4
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.7e-55 219.2 180 68.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 4.8e-55 218.8 184 63.6
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 6.3e-55 218.4 217 59.0
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 6.3e-55 218.4 177 67.8
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 6.3e-55 218.4 177 67.8
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 6.3e-55 218.4 142 78.9
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 8.2e-55 218.0 180 66.7
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.1e-54 217.6 157 72.6
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.4e-54 217.2 176 67.0
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.8e-54 216.9 179 65.9
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.4e-54 216.5 220 58.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.2e-53 214.2 220 58.2
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-53 213.8 154 72.1
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.0e-53 213.4 226 58.0
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-53 213.0 231 56.3
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.6e-53 213.0 231 56.3
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 3.4e-53 212.6 214 58.4
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 5.9e-53 211.8 153 71.9
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.0e-52 211.1 180 65.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.0e-52 211.1 171 64.9
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.0e-52 211.1 139 74.1
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.3e-52 210.7 171 64.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 6.5e-52 208.4 172 64.5
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 4.2e-51 205.7 142 76.1
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.2e-51 205.7 162 66.7
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 7.2e-51 204.9 182 66.5
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.3e-49 199.9 174 67.2
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 2.3e-49 199.9 183 65.6
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.8e-46 190.3 177 61.0
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.8e-46 190.3 188 58.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 4.1e-46 189.1 160 66.2
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 5.3e-46 188.7 182 59.9
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.2e-45 187.6 187 59.9
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 2.0e-45 186.8 128 71.9
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.6e-45 186.4 182 59.3
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 3.0e-41 172.9 204 53.4
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 6.7e-41 171.8 128 65.6
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.1e-40 171.0 129 69.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 3.3e-40 169.5 129 68.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.2e-39 166.8 147 63.3
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.2e-39 166.8 150 63.3
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 3.3e-32 142.9 118 62.7
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 8.2e-31 138.3 128 63.3
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 5.0e-28 129.0 179 51.4
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.5e-27 127.5 109 61.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.7e-26 123.2 151 49.7
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.8e-25 120.6 98 65.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.1e-22 111.3 77 75.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 4.1e-22 109.4 76 72.4
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 4.1e-22 109.4 76 72.4
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.0e-17 92.8 67 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.5e-16 90.9 69 68.1
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.0e-09 68.2 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.1e-06 58.2 107 40.2


User provided reference genes

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