Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 4.1e-170 601.3 301 100.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 1.2e-145 520.0 303 85.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-140 502.7 281 86.8
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-139 498.8 307 81.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 6.4e-139 497.7 271 88.2
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.2e-138 495.4 270 88.5
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.2e-138 495.4 270 88.1
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 4.2e-138 495.0 288 84.4
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 7.1e-138 494.2 270 88.1
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.5e-137 491.9 314 79.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.0e-136 490.3 313 78.9
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 3.9e-136 488.4 302 81.1
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.1e-135 486.9 302 80.8
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.5e-135 486.5 277 86.3
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.9e-135 486.1 270 87.4
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.9e-135 486.1 263 88.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 3.3e-135 485.3 290 82.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 4.3e-135 485.0 294 81.6
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 9.6e-135 483.8 302 80.1
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.6e-134 483.0 269 87.0
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.1e-134 482.6 290 81.4
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.1e-134 482.6 302 79.8
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.7e-134 481.9 302 79.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 6.2e-134 481.1 297 82.2
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.2e-134 481.1 302 79.5
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 6.2e-134 481.1 263 87.8
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.4e-133 479.9 307 77.5
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.4e-133 479.2 301 78.4
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 4.0e-133 478.4 301 77.7
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 4.0e-133 478.4 267 85.0
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 5.3e-133 478.0 300 78.3
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 5.3e-133 478.0 279 84.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 6.9e-133 477.6 303 77.2
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 6.9e-133 477.6 293 80.9
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.9e-133 477.6 255 88.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 9.0e-133 477.2 264 86.0
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.2e-132 476.9 301 77.7
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.2e-132 476.9 270 84.1
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.0e-132 476.1 255 88.2
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.0e-132 476.1 309 76.7
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 3.4e-132 475.3 303 77.6
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 4.5e-132 474.9 312 76.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 4.5e-132 474.9 301 79.1
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 5.8e-132 474.6 300 79.0
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 5.8e-132 474.6 269 84.4
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 9.9e-132 473.8 254 89.0
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.7e-131 473.0 299 78.9
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.2e-131 472.6 308 77.3
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 2.2e-131 472.6 278 82.4
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.2e-131 472.6 307 75.6
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 4.9e-131 471.5 271 82.7
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 8.4e-131 470.7 273 82.4
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 8.4e-131 470.7 281 82.2
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 8.4e-131 470.7 305 78.0
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-130 470.3 279 83.5
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 4.2e-130 468.4 299 78.3
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 5.5e-130 468.0 290 79.7
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 9.3e-130 467.2 308 76.6
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.2e-129 466.8 290 79.0
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.2e-129 466.8 269 81.8
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.2e-129 466.8 289 77.5
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 2.7e-129 465.7 308 75.3
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.5e-129 465.3 290 78.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.5e-129 465.3 302 76.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.5e-129 465.3 302 76.5
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 3.5e-129 465.3 265 81.5
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.3e-128 463.4 297 76.8
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 6.7e-128 461.1 290 78.6
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.5e-127 459.9 292 77.4
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.5e-127 459.9 243 88.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.5e-127 459.9 243 88.5
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.9e-127 459.5 292 77.4
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.3e-127 458.4 251 86.9
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.6e-127 458.0 243 88.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 7.4e-127 457.6 290 75.5
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 7.4e-127 457.6 270 80.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.3e-126 456.8 267 79.8
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.6e-126 456.4 305 75.1
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.1e-126 456.1 301 74.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.8e-126 455.7 267 80.5
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 3.7e-126 455.3 301 76.1
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.1e-125 453.8 298 75.5
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.8e-125 453.0 301 74.8
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.8e-125 453.0 271 79.7
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 3.1e-125 452.2 279 79.6
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 6.9e-125 451.1 243 87.2
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 9.0e-125 450.7 312 72.4
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 9.0e-125 450.7 295 74.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.5e-124 449.9 297 73.7
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.0e-124 449.5 265 79.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.0e-124 449.5 283 74.6
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.6e-124 447.6 309 70.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.0e-120 435.6 289 75.4
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 3.3e-119 432.2 252 80.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 5.7e-119 431.4 281 77.2
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 5.1e-112 408.3 268 74.3
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.6e-108 396.0 219 87.7
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 3.2e-106 389.0 269 69.1
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 4.4e-103 378.6 279 66.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.7e-103 378.3 259 67.6
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-102 376.3 277 72.9
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.4e-101 372.9 279 63.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 7.7e-100 367.9 271 65.7
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 9.4e-98 360.9 247 76.9
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 8.0e-97 357.8 192 90.1
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 3.9e-96 355.5 251 72.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 8.8e-96 354.4 190 89.5
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.5e-92 342.4 192 82.8
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 5.9e-92 341.7 266 62.4
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.7e-91 340.1 192 82.3
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 9.4e-90 334.3 190 83.2
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 4.0e-88 328.9 184 86.4
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.7e-86 323.6 241 67.6
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 6.3e-86 321.6 177 85.9
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 3.5e-84 315.8 263 58.9
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 7.7e-84 314.7 256 60.9
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.3e-83 313.9 209 76.6
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 4.7e-81 305.4 243 59.7
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-67 260.0 256 53.9
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.6e-65 253.8 176 74.4
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 5.8e-63 245.4 188 66.5
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.9e-61 240.4 255 53.7
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-39 167.9 132 63.6
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.4e-37 161.0 85 85.9
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.2e-36 157.9 274 37.2
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.5e-23 112.8 319 27.9
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 5.8e-23 112.5 72 70.8
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.4e-21 107.8 65 75.4
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.1e-20 104.0 288 31.2
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 5.3e-16 89.4 104 55.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.7e-14 84.3 73 57.5
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 5.8e-07 59.3 36 83.3


User provided reference genes

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