Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.9e-184 649.0 331 100.0
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.6e-151 538.5 327 85.3
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 8.1e-151 537.3 327 85.0
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 5.2e-150 534.6 331 84.6
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 5.2e-150 534.6 327 85.0
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 6.8e-150 534.3 329 84.2
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.4e-149 531.9 331 83.7
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 7.5e-149 530.8 331 83.4
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 2.2e-148 529.3 329 83.0
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.7e-148 528.5 331 83.1
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 4.9e-148 528.1 329 82.4
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 6.4e-148 527.7 329 83.3
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 6.4e-148 527.7 334 82.3
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.4e-147 526.6 334 82.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.4e-147 525.8 331 83.1
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 5.4e-147 524.6 330 82.1
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 9.2e-147 523.9 328 82.0
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.2e-146 523.5 338 79.6
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.2e-146 523.5 329 83.0
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.6e-146 523.1 338 79.9
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 3.5e-146 521.9 331 80.1
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 4.6e-146 521.5 331 82.2
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 7.8e-146 520.8 331 80.1
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.0e-145 520.4 338 79.9
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.3e-145 519.2 331 81.3
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 3.9e-145 518.5 331 83.1
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 5.1e-145 518.1 328 81.4
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 5.1e-145 518.1 325 82.5
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 6.6e-145 517.7 331 81.0
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 6.6e-145 517.7 328 81.1
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.6e-145 517.7 329 82.4
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.1e-144 516.9 358 76.0
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 2.5e-144 515.8 332 80.4
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.5e-144 515.8 338 78.4
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.5e-144 515.8 329 82.1
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 3.3e-144 515.4 326 81.9
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 5.6e-144 514.6 338 78.4
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.3e-144 514.2 338 79.0
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 7.3e-144 514.2 338 78.1
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 9.5e-144 513.8 338 78.1
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.4
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.4
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.1e-143 512.7 331 81.3
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.8e-143 512.3 326 80.7
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.8e-143 512.3 327 80.1
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.6e-143 511.9 338 78.7
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.6e-143 511.9 332 81.6
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.6e-143 511.9 332 81.6
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 4.7e-143 511.5 331 80.7
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 8.1e-143 510.8 339 77.9
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.4e-142 510.0 331 80.4
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.8e-142 509.6 327 80.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.1e-142 508.8 334 78.4
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.1e-142 508.8 331 80.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.1e-142 508.8 335 77.9
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 3.1e-142 508.8 335 77.9
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.1e-142 508.8 332 79.2
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 4.0e-142 508.4 328 80.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 4.0e-142 508.4 327 79.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.0e-142 508.4 327 80.7
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.5e-141 506.5 328 80.2
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.0e-141 506.1 331 79.2
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.6e-141 505.8 337 79.8
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 4.4e-141 505.0 331 78.9
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 4.4e-141 505.0 339 77.3
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 7.6e-141 504.2 331 80.1
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 7.6e-141 504.2 331 80.1
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.2e-140 502.7 336 77.4
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.2e-140 502.7 331 78.2
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 6.4e-140 501.1 331 79.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-138 496.5 330 78.2
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-138 496.5 330 78.2
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.6e-138 496.5 330 78.2
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.6e-138 496.5 330 78.2
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.7e-138 495.7 327 77.7
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.5e-138 495.4 331 78.9
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 4.6e-138 495.0 330 78.2
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 4.6e-138 495.0 325 79.1
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.6e-138 495.0 330 78.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.3e-137 492.7 382 70.4
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-137 492.3 331 78.2
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 5.1e-137 491.5 333 76.0
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 8.6e-137 490.7 330 77.6
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.5e-136 490.0 455 62.0
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.9e-136 489.6 370 73.0
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 4.3e-136 488.4 330 77.0
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 7.3e-136 487.6 330 77.0
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 9.6e-136 487.3 330 77.0
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 9.6e-136 487.3 331 76.7
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.1e-135 486.1 331 76.7
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 2.8e-135 485.7 331 76.4
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 6.2e-135 484.6 327 78.6
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.8e-134 483.0 334 75.7
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.4e-134 482.6 331 77.0
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.2e-133 480.3 314 78.7
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.7e-132 476.5 330 75.5
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.1e-131 473.8 310 80.6
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 3.9e-129 465.3 331 74.6
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.1e-128 463.8 329 74.5
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 7.3e-128 461.1 331 76.7
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 9.6e-128 460.7 300 79.7
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 6.2e-127 458.0 328 72.6
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 6.9e-126 454.5 328 71.6
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 8.4e-124 447.6 333 69.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-122 443.7 308 76.3
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.7e-122 442.6 324 73.1
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.5e-122 442.2 377 66.6
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.8e-118 429.9 327 68.5
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 5.3e-118 428.3 331 70.7
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 9.0e-118 427.6 336 69.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 6.7e-113 411.4 339 68.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.7e-113 411.0 280 75.7
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.7e-108 396.7 320 66.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.2e-107 392.1 337 70.6
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.5e-99 365.2 328 57.6
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 2.7e-98 362.8 336 59.2
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 5.1e-97 358.6 322 58.1
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-93 347.4 234 76.9
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.6e-93 346.3 233 76.4
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 7.4e-88 328.2 273 66.3
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 3.1e-86 322.8 316 58.5
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 9.1e-86 321.2 167 98.2
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 5.0e-84 315.5 167 95.8
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 8.2e-79 298.1 331 55.6
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.4e-78 297.4 241 63.5
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 9.1e-78 294.7 167 92.2
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-77 294.3 167 90.4
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.2e-77 294.3 167 87.4
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.2e-77 294.3 231 67.5
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.1e-70 269.2 136 99.3
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.6e-66 257.3 334 42.5
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.8e-63 246.5 264 56.1
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 2.8e-63 246.5 137 92.7
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.7e-60 237.3 134 86.6
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 8.5e-60 235.0 134 88.1
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 2.1e-58 230.3 327 46.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.4e-46 189.1 103 89.3
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 2.9e-39 166.8 91 93.4
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 7.0e-38 162.2 181 54.1
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.0e-32 144.1 132 60.6
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 3.4e-32 143.3 118 62.7
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.4e-32 142.9 77 93.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-31 141.0 90 82.2
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-30 138.3 70 91.4
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.9e-30 137.5 69 92.8
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 4.1e-30 136.3 88 77.3
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 2.3e-28 130.6 70 88.6
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 3.3e-27 126.7 82 75.6
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-25 121.7 65 87.7
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-25 121.7 73 83.6
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.1e-25 120.2 74 81.1
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.0e-24 117.5 80 75.0
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 4.4e-24 116.3 67 91.0
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.4e-24 116.3 66 90.9
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.4e-24 116.3 69 84.1
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 2.0e-08 64.3 85 49.4
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.5e-08 63.2 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9
A10p19460 Brassica napus HOM05D004483 ORTHO05D101033 7.1e-06 55.8 33 81.8


User provided reference genes

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