Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 6.8e-215 750.4 370 100.0
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 9.2e-204 713.4 370 95.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.6e-179 632.9 372 83.6
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.5e-161 572.4 372 76.3
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.8e-160 568.9 372 75.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 7.1e-156 554.3 372 74.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.2e-155 553.5 374 76.2
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.6e-155 553.1 372 73.4
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.7e-155 552.4 372 73.1
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 3.9e-154 548.5 374 72.7
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.9e-154 548.5 373 74.5
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.1e-154 548.1 372 74.2
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.7e-154 547.4 373 73.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.1e-153 547.0 372 73.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.5e-153 546.6 372 73.9
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 9.6e-153 543.9 373 71.8
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.1e-152 542.7 372 72.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.7e-152 542.0 373 71.8
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.1e-151 540.4 370 73.0
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-151 540.0 373 71.8
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.8e-151 539.7 378 72.8
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.1e-151 538.9 370 72.7
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.1e-151 538.9 373 73.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.9e-149 532.3 369 71.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.9e-149 532.3 369 71.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.8e-149 531.9 370 72.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 7.1e-148 527.7 370 72.2
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.6e-147 526.6 374 69.8
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.6e-147 526.6 372 71.0
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.7e-147 525.8 370 71.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-146 523.5 370 70.0
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 4.3e-145 518.5 372 71.5
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.3e-144 516.9 371 69.8
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.6e-144 516.5 370 68.6
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-144 516.5 371 71.4
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.2e-144 514.6 378 68.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.8e-143 513.1 370 69.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 4.0e-143 511.9 370 70.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.0e-142 509.6 369 70.2
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.4e-142 508.8 370 70.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.3e-141 506.9 370 70.5
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.1e-140 503.8 374 67.4
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.4e-140 503.4 331 77.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.2e-139 500.4 374 67.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.5e-137 493.4 355 71.3
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.7e-136 488.8 372 65.3
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 4.8e-136 488.4 371 65.2
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 5.3e-135 485.0 372 68.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 4.5e-134 481.9 372 65.1
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.0e-133 480.7 373 67.3
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.3e-133 480.3 370 65.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.1e-132 477.2 349 70.2
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.9e-132 476.5 371 65.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.9e-132 476.5 331 72.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.9e-132 476.5 347 71.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-131 473.8 375 65.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 7.9e-131 471.1 376 63.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.8e-130 469.9 364 64.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.8e-130 469.9 414 58.0
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 8.8e-130 467.6 370 61.9
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.5e-129 466.8 371 61.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.5e-129 466.8 306 76.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.8e-128 462.6 381 64.0
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 6.3e-128 461.5 342 68.4
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.2e-128 461.1 370 60.3
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 9.1e-127 457.6 357 65.5
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.5e-126 456.8 370 58.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.6e-126 456.1 371 60.1
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.2e-125 453.0 376 62.8
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 8.5e-125 451.1 374 62.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.4e-124 450.3 374 61.0
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.4e-124 450.3 349 64.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 3.2e-124 449.1 375 61.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 5.5e-124 448.4 378 60.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.2e-123 447.2 376 62.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.2e-123 447.2 375 63.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.2e-123 447.2 370 61.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-123 447.2 374 61.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.2e-123 447.2 407 59.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.9e-123 444.5 374 61.2
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 5.1e-122 441.8 376 61.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 8.8e-122 441.0 374 59.6
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.3e-121 439.1 378 59.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 5.7e-121 438.3 385 59.5
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 5.7e-121 438.3 378 59.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.8e-120 436.0 365 61.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.7e-120 435.6 337 66.2
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 3.7e-120 435.6 387 59.4
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 4.8e-120 435.3 347 61.7
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 8.2e-120 434.5 378 59.0
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.1e-119 434.1 378 59.3
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-119 433.7 375 60.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.1e-119 432.6 371 59.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.5e-118 430.3 370 61.9
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.0e-118 429.9 324 67.0
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.6e-118 429.5 379 59.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 3.8e-117 425.6 380 59.5
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.0e-117 425.2 373 60.1
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.1e-116 424.1 379 59.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.5e-116 423.7 328 66.2
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 7.2e-116 421.4 378 59.0
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.1e-115 419.9 358 61.7
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 6.1e-115 418.3 353 61.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 5.9e-110 401.7 350 60.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 7.7e-110 401.4 370 57.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.1e-108 397.5 357 57.4
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 9.4e-108 394.4 370 58.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 9.4e-108 394.4 335 60.9
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.3e-106 389.8 372 52.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.0e-105 386.7 373 52.3
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.4e-105 386.0 372 52.4
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.4e-105 386.0 372 52.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.7e-104 383.6 310 62.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 3.7e-104 382.5 361 55.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.2e-102 377.5 323 58.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.7e-99 366.3 371 50.7
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 3.0e-98 362.8 382 49.2
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.8e-97 357.8 395 49.4
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.8e-96 356.3 348 52.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 3.7e-88 329.3 300 59.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.9e-88 328.9 377 49.1
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 7.0e-87 325.1 302 57.6
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 4.3e-84 315.8 384 46.1
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.8e-83 313.2 478 41.2
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.5e-81 307.4 275 59.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 4.4e-81 305.8 342 48.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 5.8e-81 305.4 232 64.7
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.4e-79 300.1 243 63.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.2e-79 298.1 289 56.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.3e-77 294.3 404 40.1
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.9e-72 276.6 280 55.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.3e-69 267.7 386 39.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.9e-65 251.5 243 56.0
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.9e-64 250.0 253 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.4e-63 247.7 385 36.6
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.1e-63 246.1 234 55.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.0e-61 240.0 215 54.9
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.9e-58 228.4 262 47.3
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.3e-55 218.4 211 56.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.1e-54 217.2 345 37.7
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.1e-50 203.4 155 66.5
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.9e-50 202.2 387 31.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.4e-47 192.6 115 75.7
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.9e-46 188.7 137 65.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.7e-28 129.4 149 51.7
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 5.7e-28 129.4 74 82.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.0e-25 120.9 426 25.1
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.6e-22 109.8 207 30.9
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 3.1e-18 97.1 73 69.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.0e-17 94.4 120 43.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.3e-13 80.9 42 85.7
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 3.0e-13 80.5 53 75.5
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 1.5e-09 68.2 38 89.5
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.4e-09 67.0 75 48.0
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.9e-08 63.9 61 54.1
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.2e-06 58.5 94 40.4


User provided reference genes

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