Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 4.6e-115 417.9 213 100.0
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.3e-90 336.7 213 84.5
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 3.0e-90 335.5 214 80.4
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.2e-75 287.0 188 78.7
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 2.5e-73 279.3 215 69.8
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 8.2e-72 274.2 219 67.1
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 8.2e-72 274.2 215 69.8
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 5.9e-70 268.1 200 70.5
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 3.8e-69 265.4 183 76.5
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 6.5e-69 264.6 180 75.0
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 8.5e-69 264.2 192 74.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.1e-68 263.8 217 67.3
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.6e-67 258.8 208 68.8
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 6.1e-67 258.1 206 69.4
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 7.4e-65 251.1 196 68.4
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 9.7e-65 250.8 206 66.5
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 1.3e-64 250.4 211 64.9
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 1.7e-64 250.0 196 67.3
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.8e-64 249.2 196 67.9
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 3.7e-64 248.8 211 65.9
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 3.7e-64 248.8 206 66.0
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 3.7e-64 248.8 213 64.3
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.8e-64 248.4 206 65.5
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.8e-64 248.4 208 64.4
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 8.2e-64 247.7 213 62.0
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 8.2e-64 247.7 176 73.3
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.1e-63 245.4 146 82.2
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 5.3e-63 245.0 199 63.8
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.3e-63 245.0 146 82.2
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 6.9e-63 244.6 207 62.8
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 3.4e-62 242.3 186 67.7
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 3.4e-62 242.3 186 67.7
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 4.5e-62 241.9 185 69.7
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 5.9e-62 241.5 163 76.1
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.3e-61 240.4 192 65.6
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.7e-61 240.0 176 70.5
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.9e-61 239.2 211 63.5
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 6.5e-61 238.0 172 71.5
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.5e-61 237.7 208 62.0
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.1e-60 237.3 150 76.7
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.9e-60 236.5 184 67.9
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 7.2e-60 234.6 171 69.0
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-59 233.8 208 60.1
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-59 233.8 208 60.1
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 1.6e-59 233.4 171 70.8
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.7e-59 232.6 208 59.6
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 3.6e-59 232.3 217 60.8
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 3.6e-59 232.3 172 70.3
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 3.6e-59 232.3 179 68.2
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 7.9e-59 231.1 198 61.1
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.0e-58 230.7 185 64.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 1.8e-58 229.9 185 65.9
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.8e-58 229.9 179 67.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 3.0e-58 229.2 185 63.8
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 5.1e-58 228.4 190 61.1
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.8e-58 227.6 208 60.1
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 8.8e-58 227.6 142 80.3
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 2.0e-57 226.5 196 60.7
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.0e-57 226.5 202 60.4
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 2.6e-57 226.1 203 58.6
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 3.3e-57 225.7 211 57.3
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 5.7e-57 224.9 209 58.4
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 5.7e-57 224.9 164 67.7
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 7.4e-57 224.6 157 70.7
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 7.4e-57 224.6 202 59.9
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 7.4e-57 224.6 175 64.0
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 7.4e-57 224.6 209 59.3
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 9.7e-57 224.2 202 59.4
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.2e-56 223.0 181 66.9
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 2.8e-56 222.6 185 63.2
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 2.8e-56 222.6 184 63.0
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 3.7e-56 222.2 187 63.6
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 6.3e-56 221.5 217 56.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 2.4e-55 219.5 182 63.7
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.2e-54 217.2 238 52.5
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 1.2e-54 217.2 190 61.1
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.2e-54 217.2 154 68.8
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.1e-52 210.7 208 56.7
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.5e-52 210.3 162 64.2
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 2.5e-52 209.5 178 62.4
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 7.2e-52 208.0 182 67.6
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.6e-51 206.8 147 68.7
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.6e-51 205.7 227 53.7
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 3.0e-50 202.6 194 58.8
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 6.7e-50 201.4 131 75.6
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.1e-49 200.7 173 63.6
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 9.7e-49 197.6 187 57.2
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 1.6e-46 190.3 143 68.5
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.7e-45 186.8 144 67.4
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.3e-40 168.3 157 51.6
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 6.3e-40 168.3 157 51.6
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 3.1e-39 166.0 125 68.0
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 4.1e-39 165.6 157 51.0
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.9e-37 159.5 151 58.9
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 4.0e-34 149.1 89 82.0
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.7e-30 136.3 152 44.1
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 4.7e-27 125.6 169 39.6
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 1.0e-26 124.4 148 48.6
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 4.1e-23 112.5 113 52.2
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 5.9e-22 108.6 185 33.5
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 1.3e-21 107.5 66 78.8
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.8e-18 97.1 183 40.4
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-17 93.6 116 47.4
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.8e-17 92.0 187 36.4
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.6e-14 84.0 157 28.7
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 8.6e-13 78.2 141 33.3
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 7.3e-12 75.1 135 30.4
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 6.2e-11 72.0 50 70.0
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 3.1e-10 69.7 69 53.6
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.5e-09 67.4 44 72.7
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.7e-08 63.9 39 79.5
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 9.2e-07 58.2 49 51.0
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 9.2e-07 58.2 32 81.2


User provided reference genes

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