Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.3e-54 216.5 135 100.0
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 8.3e-46 187.2 131 76.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.5e-34 149.1 131 67.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-32 142.9 134 57.5
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.4e-32 142.5 131 58.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.2e-32 141.4 131 58.8
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 9.6e-26 120.6 152 65.1
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-20 103.6 131 47.3
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.0e-19 100.5 131 46.6
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.7e-19 97.8 132 44.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 8.7e-19 97.4 130 44.6
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.5e-18 96.7 130 43.8
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.5e-18 96.7 130 43.8
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.5e-18 95.9 130 43.8
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.4e-18 94.4 132 43.9
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 2.1e-17 92.8 73 60.3
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 3.6e-17 92.0 132 47.7
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 8.1e-17 90.9 132 43.9
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.4e-16 90.1 126 42.9
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.4e-16 90.1 132 43.9
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 2.4e-16 89.4 130 46.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.0e-16 88.6 132 43.9
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 6.9e-16 87.8 116 45.7
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 6.9e-16 87.8 128 39.8
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 6.9e-16 87.8 73 57.5
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 9.0e-16 87.4 114 44.7
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 9.0e-16 87.4 117 47.9
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.0e-15 86.3 79 58.2
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 3.4e-15 85.5 73 57.5
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 4.5e-15 85.1 132 40.9
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.5e-15 85.1 75 54.7
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.5e-15 85.1 75 54.7
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 5.8e-15 84.7 132 39.4
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.8e-15 84.7 135 42.2
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 9.9e-15 84.0 62 61.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.3e-14 83.6 82 58.5
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.3e-14 83.6 74 51.4
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-14 83.6 131 38.2
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.3e-14 83.6 131 38.2
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.7e-14 83.2 112 44.6
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.7e-14 83.2 60 60.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.2e-14 82.8 60 60.0
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 2.2e-14 82.8 75 53.3
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 2.2e-14 82.8 133 42.1
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.9e-14 82.4 73 54.8
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.9e-14 82.4 111 46.8
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 3.8e-14 82.0 74 51.4
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.8e-14 82.0 131 39.7
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 4.9e-14 81.6 75 54.7
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 4.9e-14 81.6 73 53.4
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 4.9e-14 81.6 64 57.8
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 4.9e-14 81.6 73 53.4
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 4.9e-14 81.6 77 57.1
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.4e-14 81.3 75 53.3
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.4e-14 81.3 113 43.4
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.4e-14 80.9 131 37.4
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.4e-14 80.9 129 38.8
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.4e-14 80.9 74 56.8
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-13 80.5 132 40.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.1e-13 80.5 60 60.0
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.4e-13 80.1 72 54.2
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.4e-13 80.1 75 57.3
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.9e-13 79.7 111 45.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.4e-13 79.3 72 54.2
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 3.2e-13 79.0 60 60.0
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.2e-13 79.0 133 38.3
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 4.2e-13 78.6 75 56.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.2e-13 78.6 75 56.0
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.2e-13 78.6 75 56.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.2e-13 78.6 75 56.0
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 7.1e-13 77.8 71 49.3
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.1e-13 77.8 58 67.2
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 9.3e-13 77.4 59 66.1
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 9.3e-13 77.4 74 45.9
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 9.3e-13 77.4 73 52.1
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 9.3e-13 77.4 129 40.3
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 9.3e-13 77.4 72 50.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 9.3e-13 77.4 72 50.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.2e-12 77.0 74 47.3
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-12 76.6 72 50.0
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.1e-12 76.3 54 68.5
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.1e-12 76.3 73 49.3
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.7e-12 75.9 54 70.4
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 3.5e-12 75.5 72 51.4
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.5e-12 75.5 111 43.2
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-12 75.1 71 53.5
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.0e-12 74.7 75 54.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.0e-11 73.9 75 56.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.3e-11 73.6 56 66.1
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.3e-11 73.6 56 66.1
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.3e-11 73.6 59 66.1
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-11 73.2 71 50.7
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.3e-11 72.8 72 44.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.0e-11 72.4 113 39.8
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.9e-11 72.0 73 52.1
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.1e-11 71.6 66 54.5
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.1e-11 71.6 75 53.3
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.1e-11 71.6 75 53.3
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 5.1e-11 71.6 60 58.3
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.7e-11 71.2 75 53.3
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 8.7e-11 70.9 71 49.3
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.1e-10 70.5 56 64.3
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.1e-10 70.5 74 50.0
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.9e-10 69.7 56 57.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.5e-10 69.3 59 61.0
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.5e-10 69.3 72 47.2
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 3.3e-10 68.9 59 55.9
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 4.3e-10 68.6 74 47.3
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 5.6e-10 68.2 78 55.1
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 7.4e-10 67.8 72 51.4
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 9.6e-10 67.4 72 47.2
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-09 67.0 72 45.8
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.3e-09 67.0 71 52.1
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.3e-09 67.0 72 47.2
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 2.1e-09 66.2 69 53.6
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.8e-09 65.9 77 48.1
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 2.8e-09 65.9 59 54.2
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.7e-09 65.5 56 57.1
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 3.7e-09 65.5 57 59.6
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.1e-08 63.9 71 43.7
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-08 63.9 77 46.8
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 1.4e-08 63.5 71 49.3
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.8e-08 63.2 80 45.0
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.8e-08 63.2 79 45.6
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.1e-08 62.4 66 47.0
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 4.0e-08 62.0 75 45.3
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 5.3e-08 61.6 79 44.3
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 6.9e-08 61.2 140 35.7
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 6.9e-08 61.2 140 35.7
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 6.9e-08 61.2 140 35.7
Lj3g0006440 Lotus japonicus HOM05D014522 ORTHO05D004438 6.9e-08 61.2 75 46.7
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 6.9e-08 61.2 73 45.2
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.2e-07 60.5 74 48.6
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.2e-07 60.5 76 48.7
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.2e-07 60.5 56 55.4
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.2e-07 60.5 73 49.3
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 1.5e-07 60.1 140 33.6
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 1.5e-07 60.1 68 47.1
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 2.0e-07 59.7 140 35.0
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 2.0e-07 59.7 140 35.0
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 2.0e-07 59.7 57 56.1
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.6e-07 59.3 53 54.7
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.6e-07 59.3 59 47.5
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 2.6e-07 59.3 59 47.5
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.4e-07 58.9 53 54.7
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.4e-07 58.9 74 52.7
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 3.4e-07 58.9 74 47.3
BcaB04g18593 Brassica carinata HOM05D008699 ORTHO05D012283 4.5e-07 58.5 139 41.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.5e-07 58.5 53 54.7
SEGI_13512 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 4.5e-07 58.5 53 62.3
SEGI_20981 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 4.5e-07 58.5 53 62.3
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 5.8e-07 58.2 58 50.0
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.8e-07 58.2 77 44.2
CDE03G0267 Ceratophyllum demersum HOM05D279964 ORTHO05D043887 7.6e-07 57.8 71 47.9
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 7.6e-07 57.8 60 58.3
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 1.0e-06 57.4 67 44.8
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.3e-06 57.0 46 67.4
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.3e-06 57.0 74 45.9
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 1.3e-06 57.0 55 56.4
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.7e-06 56.6 60 56.7
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 2.2e-06 56.2 58 51.7
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 3.8e-06 55.5 143 33.6
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 3.8e-06 55.5 69 44.9
ATR0998G003 Amborella trichopoda HOM05D018057 ORTHO05D004438 6.5e-06 54.7 74 44.6
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 6.5e-06 54.7 141 34.0
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 6.5e-06 54.7 86 44.2
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 6.5e-06 54.7 73 47.9
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 6.5e-06 54.7 76 39.5
AL3G21910 Arabidopsis lyrata HOM05D008699 ORTHO05D012283 8.4e-06 54.3 141 32.6
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 8.4e-06 54.3 137 34.3
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 8.4e-06 54.3 143 32.9
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 8.4e-06 54.3 53 54.7
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 8.4e-06 54.3 70 45.7
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 8.4e-06 54.3 64 45.3


User provided reference genes

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