Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.3e-285 985.7 510 100.0
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.6e-244 847.4 476 93.9
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.3e-149 533.1 515 62.7
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.7e-139 500.4 514 59.9
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 4.6e-97 359.4 520 46.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 3.9e-96 356.3 513 45.0
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 3.4e-92 343.2 519 45.7
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 7.2e-90 335.5 555 43.4
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.2e-90 335.5 519 44.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.6e-84 317.0 519 42.4
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 4.2e-82 309.7 519 42.6
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 4.2e-82 309.7 520 42.9
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.4e-80 304.7 522 42.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.9e-80 303.1 522 42.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 6.7e-80 302.4 513 41.7
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.1e-79 301.6 560 42.1
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.0e-79 300.8 522 42.3
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 7.4e-79 298.9 479 44.5
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.3e-78 295.8 513 41.5
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-77 294.7 520 39.6
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.1e-77 293.5 520 39.8
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.1e-77 293.1 520 39.8
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.0e-75 286.2 537 39.9
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 6.5e-75 285.8 520 40.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.1e-74 285.0 530 41.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.4e-74 284.6 537 39.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 3.0e-72 276.9 522 39.8
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 7.4e-71 272.3 522 39.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 2.6e-68 263.8 516 39.7
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.6e-68 263.8 523 39.4
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 2.9e-67 260.4 537 38.7
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.9e-66 257.7 520 39.0
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 7.2e-66 255.8 576 36.1
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-65 255.0 516 36.8
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.6e-65 254.6 517 38.7
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 6.1e-65 252.7 516 38.6
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.0e-64 251.9 528 38.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.8e-64 251.1 518 39.2
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 3.0e-64 250.4 546 36.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-63 248.4 521 38.8
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.5e-63 248.1 550 36.4
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 9.7e-63 245.4 545 36.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.7e-62 244.6 533 36.6
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 4.1e-61 240.0 523 37.3
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.2e-60 238.4 511 37.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.6e-60 238.0 524 37.0
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 7.7e-60 235.7 527 37.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.2e-59 234.2 515 38.3
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.8e-59 233.4 475 38.3
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.5e-58 231.5 532 36.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 5.5e-58 229.6 515 36.9
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.5e-58 229.6 513 39.2
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.6e-57 228.0 513 36.5
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 6.1e-57 226.1 515 36.5
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.8e-56 224.6 570 34.9
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 5.2e-56 223.0 528 36.7
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.5e-55 219.2 539 35.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.1e-53 215.3 527 36.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.4e-53 214.9 632 32.3
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.1e-53 213.8 527 34.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 9.1e-53 212.2 520 36.7
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.2e-52 211.8 549 34.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 7.7e-52 209.1 517 36.0
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.3e-51 207.6 533 35.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 6.6e-51 206.1 559 34.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.5e-50 204.9 209 56.9
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 2.5e-50 204.1 524 34.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.5e-50 204.1 523 35.8
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.2e-49 201.8 561 32.6
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.7e-49 199.9 545 34.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 6.1e-49 199.5 165 67.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.3e-48 197.6 542 34.3
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 4.0e-48 196.8 553 33.1
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 4.9e-46 189.9 534 33.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.4e-45 188.3 548 32.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 2.4e-45 187.6 514 32.1
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 5.4e-45 186.4 539 32.7
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 2.0e-44 184.5 542 33.2
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.7e-44 184.1 554 32.7
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.5e-44 183.3 534 32.4
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.3e-42 176.8 534 33.9
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.1e-41 174.5 528 31.1
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 7.5e-39 166.0 554 31.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 1.3e-38 165.2 206 49.0
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 3.7e-38 163.7 537 31.3
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 3.7e-38 163.7 540 31.3
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.9e-38 163.3 537 32.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.1e-37 162.2 520 30.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 1.3e-35 155.2 506 28.5
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 8.6e-35 152.5 516 30.2
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.9e-34 151.4 530 29.8
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 8.9e-32 142.5 525 31.2
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.5e-31 141.7 515 29.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 4.4e-31 140.2 522 30.5
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 4.4e-31 140.2 522 30.5
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 5.8e-31 139.8 212 42.9
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 9.8e-31 139.0 665 27.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 3.5e-28 130.6 514 28.6
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 7.8e-28 129.4 533 29.6
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 6.6e-27 126.3 523 29.1
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 2.5e-26 124.4 315 35.6
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 3.3e-26 124.0 528 29.2
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.3e-26 124.0 354 33.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.3e-26 122.9 520 27.9
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 9.5e-26 122.5 485 28.2
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.2e-25 122.1 475 28.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 4.7e-25 120.2 498 28.7
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.4e-24 118.6 544 28.5
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.9e-22 110.9 522 28.4
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 4.9e-22 110.2 115 49.6
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.1e-21 109.0 476 26.7
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.5e-20 104.0 85 63.5
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 7.8e-20 102.8 69 72.5
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 5.6e-18 96.7 97 52.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 5.6e-18 96.7 228 35.1
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.1e-17 94.7 554 27.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.7e-14 85.1 207 34.8
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 4.9e-14 83.6 171 33.9
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.5e-10 71.2 103 36.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.3e-10 70.9 72 45.8
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 9.6e-10 69.3 61 50.8
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.3e-09 68.9 93 37.6
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.1e-09 68.2 84 41.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.1e-09 68.2 82 43.9
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 3.6e-09 67.4 78 39.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.1e-09 66.2 78 42.3
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 8.1e-09 66.2 84 41.7
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 1.4e-08 65.5 349 27.2
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.8e-08 65.1 53 60.4
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.4e-08 64.7 71 39.4
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.0e-08 63.9 133 30.1
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 4.0e-08 63.9 74 39.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 6.9e-08 63.2 251 26.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.9e-08 63.2 86 34.9
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 9.0e-08 62.8 103 37.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 9.0e-08 62.8 87 33.3
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.2e-07 62.4 54 51.9
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.2e-07 62.4 87 39.1
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.2e-07 62.4 277 24.9
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 1.2e-07 62.4 216 27.8
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.2e-07 62.4 207 28.5
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.5e-07 62.0 103 37.9
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.6e-07 61.2 107 35.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.6e-07 61.2 56 46.4
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.6e-07 61.2 87 32.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 3.4e-07 60.8 151 27.8
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 3.4e-07 60.8 61 45.9
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 4.4e-07 60.5 116 32.8
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 5.8e-07 60.1 76 36.8
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.8e-07 60.1 74 37.8
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 5.8e-07 60.1 78 37.2
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 5.8e-07 60.1 73 41.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 7.6e-07 59.7 324 27.2
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 9.9e-07 59.3 63 46.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 46.0
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.3e-06 58.9 240 27.9
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.3e-06 58.9 146 28.8
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.2e-06 58.2 78 38.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.9e-06 57.8 90 34.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.9e-06 57.8 161 30.4
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.8e-06 57.4 61 41.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.8e-06 57.4 219 26.9
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 4.9e-06 57.0 161 29.8


User provided reference genes

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