Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 8.7e-122 440.3 215 100.0
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 3.5e-115 418.3 215 95.3
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 8.2e-104 380.6 215 84.2
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 3.9e-98 361.7 221 81.4
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.8e-90 336.3 219 74.9
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 6.7e-90 334.3 223 76.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.6e-89 332.4 223 74.4
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 7.4e-89 330.9 224 76.3
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 9.7e-89 330.5 223 74.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.3e-88 330.1 223 73.5
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.3e-88 330.1 220 74.1
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-88 329.3 222 73.9
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 3.7e-88 328.6 227 74.0
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 4.1e-87 325.1 223 73.5
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 4.5e-86 321.6 219 72.1
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 7.7e-86 320.9 219 71.7
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.0e-85 320.5 213 72.3
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 8.5e-85 317.4 216 71.3
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 8.5e-85 317.4 229 69.0
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.1e-84 317.0 217 71.9
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 3.2e-84 315.5 217 72.4
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 9.4e-84 313.9 216 70.8
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.2e-83 313.5 217 71.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-83 313.5 220 70.9
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 6.1e-83 311.2 217 72.8
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 6.1e-83 311.2 224 69.2
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 8.0e-83 310.8 219 70.8
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.0e-82 310.5 227 67.8
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.4e-82 310.1 228 69.3
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 2.3e-82 309.3 226 68.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.3e-82 309.3 198 76.3
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.2e-82 308.1 222 68.9
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 8.8e-82 307.4 201 75.1
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.5e-81 306.6 192 75.5
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.3e-81 305.4 204 72.5
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 5.7e-81 304.7 222 68.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 2.2e-80 302.8 194 75.3
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 2.8e-80 302.4 220 67.7
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 6.3e-80 301.2 194 74.7
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 6.3e-80 301.2 230 68.3
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.4e-79 299.3 227 68.7
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.1e-79 298.9 228 64.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 5.3e-79 298.1 229 65.5
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 9.1e-79 297.4 218 70.2
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.2e-78 297.0 220 66.8
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.2e-78 297.0 229 67.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.2e-78 297.0 222 66.2
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.2e-78 297.0 175 79.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.6e-78 296.6 218 71.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 2.0e-78 296.2 215 67.9
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.7e-78 295.8 194 72.2
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.7e-78 295.8 217 71.0
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.5e-78 295.4 215 67.9
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 4.5e-78 295.0 219 70.8
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 7.7e-78 294.3 214 66.8
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.0e-77 293.9 211 69.2
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.0e-77 293.9 218 65.6
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.3e-77 293.5 223 68.6
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.3e-77 293.5 217 70.5
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 1.3e-77 293.5 213 68.1
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.7e-77 293.1 202 72.3
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.7e-77 293.1 223 67.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.9e-77 292.4 220 70.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 2.9e-77 292.4 223 67.7
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.9e-77 292.4 220 70.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 3.8e-77 292.0 217 70.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 3.8e-77 292.0 206 70.9
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 5.0e-77 291.6 219 70.3
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 6.5e-77 291.2 217 70.0
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.1e-76 290.4 216 69.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 5.5e-76 288.1 225 64.4
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 5.5e-76 288.1 220 68.2
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 7.2e-76 287.7 200 70.5
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.2e-75 287.0 216 69.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.2e-75 287.0 227 65.2
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.7e-75 285.8 191 73.3
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 6.1e-75 284.6 215 70.2
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 6.1e-75 284.6 178 76.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 5.2e-74 281.6 204 68.6
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 5.2e-74 281.6 176 76.1
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.0e-73 279.6 219 66.7
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 5.4e-71 271.6 173 74.6
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.7e-70 269.2 214 63.1
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.5e-70 268.9 221 63.8
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.5e-70 268.5 222 63.5
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.0e-69 267.3 151 82.8
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 5.0e-69 265.0 219 61.6
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 6.5e-69 264.6 180 70.0
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.6e-67 260.0 179 72.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.1e-67 259.6 155 80.0
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.4e-66 256.9 150 79.3
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.2e-66 255.0 202 65.3
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.2e-65 253.8 173 68.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.7e-64 250.0 176 71.0
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 4.9e-64 248.4 201 63.2
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.8e-63 246.5 152 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 3.5e-62 242.3 169 68.0
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 8.6e-61 237.7 179 60.9
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.1e-60 237.3 229 55.0
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 2.5e-60 236.1 227 56.4
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.2e-59 233.8 199 57.3
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 3.6e-59 232.3 211 58.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.7e-56 223.4 174 65.5
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 8.3e-56 221.1 151 67.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 3.2e-55 219.2 221 53.8
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.5e-52 210.3 166 67.5
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 9.5e-52 207.6 210 54.8
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 8.9e-50 201.1 219 49.3
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 2.0e-46 189.9 174 55.2
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 8.1e-43 177.9 106 78.3
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.1e-42 177.6 107 80.4
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.4e-39 167.2 95 83.2
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 3.2e-39 166.0 107 73.8
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 3.2e-39 166.0 156 59.6
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 2.8e-35 152.9 125 61.6
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 4.7e-35 152.1 138 60.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.6e-33 146.4 98 66.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.4e-32 141.4 76 84.2
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.2e-31 139.4 95 68.4
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 7.1e-31 138.3 112 64.3
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.5e-30 136.0 142 52.8
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.9e-28 130.2 83 73.5
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 9.6e-28 127.9 159 44.7
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 4.4e-25 119.0 95 62.1
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 8.4e-24 114.8 95 60.0
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 2.7e-22 109.8 97 57.7
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 7.8e-22 108.2 79 64.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 9.0e-18 94.7 53 79.2
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 3.4e-17 92.8 62 66.1
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 3.8e-16 89.4 90 53.3
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 2.7e-14 83.2 59 64.4
Cre16.g674200 Chlamydomonas reinhardtii HOM05D020894 ORTHO05D021334 3.5e-06 56.2 138 29.0


User provided reference genes

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