Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.5e-51 205.3 112 100.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-31 139.8 106 79.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-25 119.4 109 65.1
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.3e-24 115.2 98 68.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.3e-23 113.2 98 67.3
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.7e-21 104.0 102 62.7
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.7e-20 102.8 102 63.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.0e-20 101.3 108 62.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-19 100.1 107 63.6
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 9.4e-19 97.1 101 62.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-18 96.3 117 59.0
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.1e-18 94.4 100 62.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 8.0e-18 94.0 100 60.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.0e-18 94.0 100 60.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.0e-18 94.0 100 60.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.8e-17 92.8 104 59.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.0e-17 91.7 100 59.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.0e-17 91.7 111 54.1
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.8e-17 90.5 110 59.1
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.2e-16 90.1 105 59.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-16 90.1 100 60.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.2e-16 90.1 105 58.1
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.7e-16 87.8 105 57.1
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.7e-16 87.8 102 52.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.5e-16 87.4 93 61.3
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.3e-15 86.7 101 57.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.7e-15 86.3 111 52.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.8e-15 84.7 85 60.0
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 4.8e-15 84.7 102 54.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.8e-15 84.7 101 56.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 8.2e-15 84.0 102 55.9
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.4e-14 83.2 100 57.0
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.4e-14 82.4 106 51.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.2e-13 80.1 100 54.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.2e-13 80.1 97 58.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-13 80.1 102 58.8
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.7e-13 79.0 115 50.4
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.7e-13 79.0 99 58.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 4.5e-13 78.2 113 49.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.9e-13 77.8 101 58.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.9e-13 77.8 101 53.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.0e-12 77.0 110 48.2
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-12 76.6 106 56.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-12 76.6 103 52.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.3e-12 76.6 101 53.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.3e-12 76.6 92 56.5
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.7e-12 76.3 97 57.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.7e-12 76.3 104 50.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 5.0e-12 74.7 105 50.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.5e-12 74.3 97 57.7
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 8.5e-12 73.9 105 47.6
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.5e-11 73.2 102 52.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.9e-11 72.8 99 49.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.9e-11 72.8 69 62.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.5e-11 72.4 99 51.5
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.5e-11 72.4 105 56.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.2e-11 71.6 99 49.5
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.2e-11 71.6 101 49.5
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 4.2e-11 71.6 101 48.5
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.5e-11 71.2 103 47.6
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.2e-11 70.9 104 48.1
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 9.4e-11 70.5 99 48.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 9.4e-11 70.5 99 48.5
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 9.4e-11 70.5 111 45.9
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-10 70.1 99 48.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 99 48.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-10 70.1 99 48.5
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.6e-10 69.7 102 51.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-10 69.7 99 50.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-10 69.3 101 48.5
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.1e-10 69.3 99 48.5
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.7e-10 68.9 101 50.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.7e-10 68.9 104 49.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.7e-10 68.9 99 48.5
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.6e-10 68.6 101 47.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 3.6e-10 68.6 99 50.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 4.7e-10 68.2 99 49.5
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.7e-10 68.2 104 48.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.7e-10 68.2 101 46.5
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.1e-10 67.8 102 50.0
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.1e-10 67.8 101 47.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.1e-10 67.8 101 47.5
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 6.1e-10 67.8 96 52.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 6.1e-10 67.8 101 47.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 6.1e-10 67.8 90 51.1
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.1e-10 67.8 99 46.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 8.0e-10 67.4 98 53.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.4e-09 66.6 76 53.9
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-09 66.6 101 46.5
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-09 66.2 106 49.1
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 102 48.0
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.3e-09 65.9 102 48.0
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.3e-09 65.9 80 53.8
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.3e-09 65.9 87 50.6
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.0e-09 65.5 110 44.5
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.0e-09 65.5 102 46.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 4.0e-09 65.1 99 45.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 4.0e-09 65.1 99 45.5
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.0e-09 65.1 99 46.5
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.0e-09 65.1 106 50.0
Lj1g0021851 Lotus japonicus HOM05D003683 ORTHO05D004143 4.0e-09 65.1 92 50.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 4.0e-09 65.1 105 44.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.0e-09 65.1 100 50.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.2e-09 64.7 105 43.8
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.2e-09 64.7 99 48.5
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 6.8e-09 64.3 103 47.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.8e-09 64.3 104 49.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.8e-09 64.3 101 49.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 8.8e-09 63.9 77 58.4
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 8.8e-09 63.9 100 46.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.2e-08 63.5 74 56.8
arahy.Tifrunner.gnm1.ann1.1L371M Arachis hypogaea HOM05D003683 ORTHO05D004143 1.2e-08 63.5 107 40.2
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.2e-08 63.5 102 46.1
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.2e-08 63.5 101 44.6
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-08 63.5 99 45.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.5e-08 63.2 106 43.4
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.5e-08 63.2 106 41.5
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-08 63.2 99 47.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 102 43.1
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 97 44.3
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 2.6e-08 62.4 63 60.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.6e-08 62.4 100 44.0
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.6e-08 62.4 80 50.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-08 62.0 99 44.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 4.4e-08 61.6 107 46.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.4e-08 61.6 106 43.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 4.4e-08 61.6 100 44.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.7e-08 61.2 71 56.3
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 7.5e-08 60.8 101 43.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 7.5e-08 60.8 112 44.6
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.5e-08 60.8 111 39.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.5e-08 60.8 106 44.3
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 9.8e-08 60.5 45 73.3
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 9.8e-08 60.5 99 42.4
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 9.8e-08 60.5 106 47.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 9.8e-08 60.5 99 42.4
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 9.8e-08 60.5 99 42.4
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 9.8e-08 60.5 106 46.2
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 9.8e-08 60.5 103 43.7
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 99 43.4
Psat3g115360 Pisum sativum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 87 47.1
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 67 58.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.2e-07 59.3 73 50.7
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 100 45.0
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 2.2e-07 59.3 45 68.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.8e-07 58.9 79 53.2
arahy.Tifrunner.gnm1.ann1.00XFQD Arachis hypogaea HOM05D003683 ORTHO05D004143 3.7e-07 58.5 107 37.4
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 105 46.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 60 55.0
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.7e-07 58.5 99 46.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.7e-07 58.5 106 43.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-07 58.2 47 68.1
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.3e-07 57.8 108 43.5
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.3e-07 57.8 83 47.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.3e-07 57.8 86 48.8
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 6.3e-07 57.8 101 44.6
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.3e-07 57.8 100 47.0
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.3e-07 57.8 99 43.4
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.3e-07 57.4 100 44.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 8.3e-07 57.4 100 48.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 8.3e-07 57.4 71 56.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.1e-06 57.0 41 73.2
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 99 42.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-06 56.6 38 73.7
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-06 56.6 38 73.7
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 106 45.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.4e-06 55.8 78 47.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 3.1e-06 55.5 63 54.0
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 3.1e-06 55.5 75 50.7
Nitab4.5_0011654g0010 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.1e-06 55.1 60 55.0
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.1e-06 55.1 102 44.1
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-06 54.7 98 45.9
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 5.4e-06 54.7 66 53.0
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 7.0e-06 54.3 46 69.6
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 9.1e-06 53.9 46 67.4
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 9.1e-06 53.9 75 49.3


User provided reference genes

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