Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 0.0e+00 1478.4 893 100.0
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 0.0e+00 1418.3 900 95.2
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.4e-309 1066.2 810 77.9
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 6.5e-307 1057.4 914 73.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.6e-281 971.8 906 66.1
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.0e-263 912.9 917 59.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.2e-262 909.4 872 60.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.5e-258 896.7 864 60.0
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 7.3e-258 894.4 905 60.4
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.7e-254 882.1 904 61.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.5e-250 869.4 900 59.4
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.2e-249 867.1 906 59.4
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.1e-248 862.4 911 60.9
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.3e-246 857.1 855 61.5
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.1e-242 844.0 905 60.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.1e-241 839.7 909 58.0
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 4.7e-241 838.6 823 61.1
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 8.1e-241 837.8 864 59.4
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 7.6e-239 831.2 906 58.5
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 8.4e-238 827.8 864 59.7
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 8.4e-238 827.8 864 59.7
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.4e-237 827.0 897 60.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-237 826.2 905 59.3
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-237 824.7 910 59.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-236 823.9 883 55.6
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 3.5e-236 822.4 911 57.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.9e-235 818.9 900 57.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.1e-229 800.8 947 54.4
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.4e-229 800.4 882 60.4
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.9e-229 800.0 867 59.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-229 798.5 884 56.1
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.8e-228 794.7 802 60.3
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.3e-227 793.1 904 56.6
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.6e-227 791.6 909 53.9
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 2.5e-226 789.6 952 54.0
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.3e-226 788.1 830 58.3
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 9.6e-226 787.7 901 55.4
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 8.1e-225 784.6 878 57.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.4e-224 783.9 944 54.2
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.8e-224 783.5 865 60.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.1e-224 782.7 878 56.4
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 5.3e-224 781.9 771 61.3
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-223 780.8 883 55.6
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.8e-222 775.8 862 54.4
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 4.9e-222 775.4 915 55.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.1e-221 774.2 913 56.4
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.9e-221 773.5 948 52.6
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 5.4e-221 771.9 966 54.3
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.2e-220 770.8 872 54.5
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.1e-220 770.0 929 54.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 4.6e-220 768.8 872 54.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.0e-220 768.5 912 58.6
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.9e-220 768.1 875 54.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.3e-219 766.5 909 56.4
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.9e-219 765.8 872 54.1
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 6.7e-219 765.0 901 55.5
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-217 760.4 875 53.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.6e-217 760.4 956 51.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 5.8e-215 751.9 870 55.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 7.6e-215 751.5 945 53.5
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 3.8e-214 749.2 1005 49.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.9e-213 746.9 885 53.1
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 5.5e-213 745.3 966 50.4
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 9.3e-213 744.6 882 54.4
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 7.9e-212 741.5 910 52.5
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 3.0e-211 739.6 948 57.6
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.6e-210 734.6 884 54.6
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 4.0e-208 729.2 908 53.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.9e-208 728.4 903 54.5
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.7e-206 723.8 877 53.4
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.2e-204 717.6 890 52.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.3e-203 714.1 917 49.8
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.4e-200 703.4 934 53.3
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.4e-199 699.5 961 51.5
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 5.9e-191 672.2 912 51.8
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-189 666.4 816 51.2
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.2e-189 666.0 903 49.5
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.2e-188 664.5 742 57.4
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.0e-186 657.1 762 55.0
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 3.5e-183 646.4 875 49.3
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 4.5e-183 646.0 785 53.1
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.7e-182 644.0 902 47.7
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 3.8e-182 642.9 793 54.7
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.9e-181 640.6 921 50.6
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.7e-180 636.7 862 51.4
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.4e-179 634.4 946 45.7
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.5e-178 630.9 878 50.2
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.0e-178 630.6 800 55.2
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.3e-178 629.8 778 54.4
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.4e-176 624.4 778 54.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.8e-176 624.0 924 47.8
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.6e-175 620.9 916 48.6
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 2.0e-175 620.5 863 49.9
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 3.5e-175 619.8 889 47.8
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 2.2e-174 617.1 718 58.1
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.9e-173 614.0 886 47.4
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 2.6e-170 603.6 801 53.2
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.7e-167 593.6 815 49.1
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.5e-165 585.9 900 47.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 7.2e-165 585.5 825 46.2
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 2.1e-164 583.9 855 48.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 6.8e-163 578.9 913 43.4
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 2.0e-162 577.4 786 47.8
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 9.8e-162 575.1 909 46.6
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.0e-155 553.5 901 48.5
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 5.7e-154 549.3 483 65.0
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.7e-153 547.7 738 52.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 6.6e-150 535.8 807 44.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.2e-148 531.6 925 43.5
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 4.9e-137 493.0 796 43.3
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 4.3e-125 453.4 537 54.4
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 3.3e-117 427.2 942 38.2
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.1e-115 422.2 791 41.1
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 8.7e-102 375.9 612 44.0
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.1e-93 349.0 838 35.6
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 9.6e-93 345.9 394 54.8
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 1.3e-92 345.5 473 51.0
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 5.3e-91 340.1 435 50.3
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 4.5e-90 337.0 584 40.2
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.5e-85 322.0 403 50.4
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-85 321.6 521 44.0
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.9e-75 286.6 412 47.3
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.0e-74 285.0 231 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 1.5e-66 258.8 552 36.2
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.1e-61 242.7 182 67.0
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.1e-51 208.0 540 35.0
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.2e-48 198.0 214 62.1
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 7.2e-48 196.8 174 59.8
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.7e-45 187.2 186 58.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 6.6e-41 173.7 887 28.2
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.4e-35 156.0 206 59.2
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.3e-33 149.4 248 46.0
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 4.7e-31 141.0 244 37.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.2e-30 137.5 624 27.6
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.3e-28 132.9 103 68.0
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.9e-28 131.0 99 65.7
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.9e-28 131.0 99 65.7
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-27 128.6 496 29.0
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-27 127.1 165 48.5
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-26 125.2 155 50.3
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.3e-24 118.2 170 50.0
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 8.1e-23 113.6 630 22.2
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-22 112.8 102 64.7
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-21 107.1 501 29.3
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-19 101.3 501 28.5
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 8.6e-17 93.6 120 47.5
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.2e-13 83.2 62 74.2
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 7.6e-13 80.5 45 80.0
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.9e-13 80.1 158 35.4
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 1.4e-11 76.3 69 60.9
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-11 75.5 428 28.5
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-11 75.5 97 46.4
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 2.4e-11 75.5 56 69.6
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.1e-11 74.7 159 34.6
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.4e-11 74.3 159 34.6
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.4e-11 74.3 159 34.6
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 7.1e-11 73.9 73 56.2
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-10 72.8 160 35.6
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-10 72.8 160 35.6
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-10 72.4 50 64.0
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 7.8e-10 70.5 291 26.5
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-08 66.6 44 77.3
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 4.7e-07 61.2 44 68.2
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 1.4e-06 59.7 48 64.6
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 8.9e-06 57.0 45 68.9


User provided reference genes

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