Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 0.0e+00 1279.6 685 100.0
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 0.0e+00 1196.8 689 93.9
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 1.4e-277 959.5 691 74.7
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 5.6e-247 857.8 679 73.0
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 2.1e-225 786.2 667 69.1
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 9.9e-220 767.3 674 66.5
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 6.4e-219 764.6 672 64.1
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 9.6e-215 750.7 667 64.6
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 4.8e-214 748.4 684 64.6
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.2e-212 743.8 667 63.7
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 5.8e-212 741.5 692 62.4
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 2.9e-211 739.2 666 64.0
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 4.9e-211 738.4 677 62.3
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.7e-209 732.6 695 63.6
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.0e-208 730.7 688 63.2
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 3.0e-208 729.2 694 63.4
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 3.0e-208 729.2 667 65.1
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 8.7e-208 727.6 676 64.5
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.6e-206 723.4 694 63.0
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 9.0e-205 717.6 689 61.0
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.3e-203 713.8 668 61.4
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 1.7e-203 713.4 686 60.5
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 1.6e-201 706.8 674 60.8
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 2.7e-201 706.1 667 62.2
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 6.0e-201 704.9 671 60.7
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 1.1e-199 700.7 676 61.7
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 7.4e-199 698.0 661 63.8
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 2.6e-196 689.5 677 56.6
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 1.9e-194 683.3 683 60.8
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.9e-194 683.3 663 61.5
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 2.5e-194 682.9 685 59.9
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 2.1e-193 679.9 681 61.2
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.1e-193 679.9 676 62.3
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 2.3e-192 676.4 668 62.4
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.5e-191 673.7 682 59.5
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 3.3e-191 672.5 664 60.1
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 5.7e-191 671.8 692 59.4
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 3.7e-190 669.1 679 60.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 1.4e-189 667.2 672 58.9
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.6e-188 662.9 685 59.9
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 9.4e-186 654.4 682 59.7
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 9.4e-186 654.4 670 60.4
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 3.9e-184 649.0 667 61.3
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 4.3e-183 645.6 684 56.6
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 3.1e-181 639.4 679 57.9
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 2.6e-180 636.3 669 56.8
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.3e-179 634.0 712 56.6
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 1.7e-179 633.6 666 58.9
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 2.9e-179 632.9 673 58.7
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 2.9e-179 632.9 573 62.0
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 6.5e-179 631.7 530 64.9
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 7.2e-178 628.2 706 55.8
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.2e-177 627.5 667 58.0
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 6.7e-176 621.7 682 54.5
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 6.7e-176 621.7 661 56.3
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 2.0e-175 620.2 697 55.8
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 3.3e-175 619.4 684 55.3
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.8e-174 615.5 682 54.0
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 4.8e-174 615.5 742 53.2
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 8.2e-174 614.8 694 55.9
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 1.4e-173 614.0 691 55.6
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 2.6e-172 609.8 692 54.8
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 5.9e-172 608.6 703 51.6
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 5.9e-172 608.6 683 57.5
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 2.1e-169 600.1 700 54.3
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 6.1e-169 598.6 528 60.2
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 3.9e-168 595.9 668 54.6
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 6.7e-168 595.1 589 58.2
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 2.6e-167 593.2 610 61.0
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 7.4e-167 591.7 610 61.0
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 1.4e-165 587.4 685 51.8
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 3.5e-164 582.8 664 54.5
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 4.5e-164 582.4 658 56.4
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 3.8e-163 579.3 669 55.5
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 1.8e-160 570.5 574 60.5
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 7.5e-159 565.1 687 50.9
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 1.0e-155 554.7 672 52.4
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 4.7e-153 545.8 730 48.9
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 1.2e-148 531.2 668 47.3
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 1.5e-146 524.2 688 48.7
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 1.9e-146 523.9 543 55.2
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 2.8e-145 520.0 574 58.4
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 2.6e-143 513.5 521 55.9
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 2.6e-143 513.5 513 56.1
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 1.6e-140 504.2 679 47.6
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 7.8e-140 501.9 537 52.5
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 2.3e-139 500.4 684 47.5
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 5.0e-139 499.2 519 54.3
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.8e-137 493.4 597 55.1
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 4.0e-136 489.6 503 54.9
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 4.0e-136 489.6 503 54.9
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 1.5e-135 487.6 640 48.0
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 1.2e-132 478.0 542 48.5
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 3.0e-131 473.4 504 53.0
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 6.2e-129 465.7 693 45.9
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.6e-127 460.3 619 51.5
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 4.4e-127 459.5 521 50.3
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 2.3e-123 447.2 548 52.4
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 3.3e-106 390.2 374 55.6
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 5.6e-106 389.4 372 57.8
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.1e-101 375.2 428 50.5
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 1.5e-98 364.8 616 45.5
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 1.2e-92 345.1 607 42.8
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 1.6e-92 344.7 518 40.3
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.1e-80 303.9 610 40.8
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.5e-79 301.6 292 59.6
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.7e-60 237.7 226 54.9
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 1.2e-52 212.2 486 32.7
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.3e-46 192.2 235 46.8
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 2.9e-38 164.5 586 28.5
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 6.8e-35 153.3 504 30.0
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 1.1e-29 136.0 164 51.2
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 1.6e-20 105.5 188 58.0
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 1.1e-13 82.8 95 48.4
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 5.6e-13 80.5 50 74.0
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 7.5e-10 70.1 114 42.1


User provided reference genes

Program Settings