Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 3.5e-52 208.0 105 100.0
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 5.3e-40 167.5 96 87.5
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 2.7e-23 112.1 104 60.6
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 3.0e-19 98.6 105 57.1
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 1.3e-17 93.2 97 55.7
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 3.1e-16 88.6 94 52.1
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.0e-15 85.9 100 51.0
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 3.5e-15 85.1 103 49.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 4.5e-15 84.7 100 52.0
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 7.7e-15 84.0 109 50.5
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.7e-14 82.8 108 50.0
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 8.5e-14 80.5 95 51.6
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 1.2e-12 76.6 80 50.0
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 1.4e-11 73.2 100 44.0
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 2.3e-11 72.4 102 43.1
FAN06G4130 Fragaria x ananassa HOM05D019773 ORTHO05D007271 6.8e-11 70.9 111 40.5
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 6.8e-11 70.9 104 43.3
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 6.8e-11 70.9 111 40.5
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.0e-10 69.3 74 54.1
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 2.0e-10 69.3 105 43.8
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 2.6e-10 68.9 71 47.9
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 3.4e-10 68.6 104 42.3
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 4.4e-10 68.2 110 40.9
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 4.4e-10 68.2 94 44.7
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 5.7e-10 67.8 83 44.6
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 5.7e-10 67.8 93 46.2
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 7.5e-10 67.4 101 38.6
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 9.8e-10 67.0 92 45.7
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 1.3e-09 66.6 84 50.0
FAN03G2059 Fragaria x ananassa HOM05D019773 ORTHO05D007271 1.7e-09 66.2 105 41.0
FAN10G2337 Fragaria x ananassa HOM05D019773 ORTHO05D007271 1.7e-09 66.2 105 41.0
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 2.2e-09 65.9 114 41.2
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 2.8e-09 65.5 105 37.1
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 4.9e-09 64.7 104 41.3
BcaB01g00155 Brassica carinata HOM05D009695 ORTHO05D007271 6.3e-09 64.3 99 44.4
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 8.3e-09 63.9 101 47.5
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.1e-08 63.5 96 41.7
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.1e-08 62.0 103 41.7
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.1e-08 62.0 116 36.2
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 3.1e-08 62.0 72 52.8
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.1e-08 61.6 116 36.2
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 4.1e-08 61.6 102 46.1
Lj5g0009165 Lotus japonicus HOM05D007861 ORTHO05D007271 5.4e-08 61.2 104 42.3
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 7.0e-08 60.8 116 36.2
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 7.0e-08 60.8 92 42.4
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 9.2e-08 60.5 106 39.6
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 9.2e-08 60.5 71 50.7
BcaC07g39776 Brassica carinata HOM05D009695 ORTHO05D007271 1.2e-07 60.1 103 41.7
C08p30020 Brassica napus HOM05D009695 ORTHO05D007271 1.2e-07 60.1 103 41.7
BolC8t50611H Brassica oleracea HOM05D009695 ORTHO05D007271 1.2e-07 60.1 103 41.7
A09p47770 Brassica napus HOM05D009695 ORTHO05D007271 2.7e-07 58.9 103 41.7
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.9e-07 57.8 99 35.4
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.0e-06 57.0 105 41.0
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.3e-06 56.6 105 41.9
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.7e-06 56.2 99 36.4
CARHR164810 Cardamine hirsuta HOM05D009695 ORTHO05D007271 1.7e-06 56.2 103 38.8
AL5G35930 Arabidopsis lyrata HOM05D009695 ORTHO05D007271 2.3e-06 55.8 97 41.2
arahy.Tifrunner.gnm1.ann1.DME8QF Arachis hypogaea HOM05D051911 ORTHO05D007271 2.3e-06 55.8 39 61.5
arahy.Tifrunner.gnm1.ann1.JM7P1B Arachis hypogaea HOM05D051911 ORTHO05D007271 2.3e-06 55.8 35 62.9
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.3e-06 55.8 98 42.9
Carub.0005s2144 Capsella rubella HOM05D009695 ORTHO05D007271 2.9e-06 55.5 89 38.2
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 5.0e-06 54.7 103 40.8
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 5.0e-06 54.7 98 38.8
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 8.6e-06 53.9 95 35.8
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 8.6e-06 53.9 107 39.3


User provided reference genes

Program Settings