Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.6e-106 389.4 191 100.0
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 3.9e-97 358.2 184 95.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.6e-95 352.8 184 93.5
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 2.1e-79 299.3 182 80.8
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 5.8e-77 291.2 184 78.3
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 8.1e-71 270.8 184 73.9
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 3.1e-70 268.9 191 70.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 6.9e-70 267.7 184 74.5
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 2.0e-69 266.2 182 72.0
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 7.6e-69 264.2 184 72.8
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.9e-69 263.8 183 72.7
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 9.9e-69 263.8 184 71.2
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.9e-68 262.3 185 71.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.8e-68 261.9 185 71.4
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 3.8e-68 261.9 184 72.8
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-67 260.4 182 69.8
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-67 260.0 188 68.6
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.9e-67 259.6 189 71.4
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.4e-67 259.2 184 69.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.4e-67 259.2 188 68.1
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.2e-67 258.8 184 69.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 3.2e-67 258.8 190 68.9
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 5.4e-67 258.1 184 70.1
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 9.3e-67 257.3 184 69.0
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.2e-66 256.9 184 68.5
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.2e-66 256.9 184 68.5
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.2e-66 256.9 189 68.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.6e-66 256.5 181 70.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-66 256.5 184 69.0
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.5e-66 255.4 184 71.2
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.6e-66 255.0 184 68.5
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 6.0e-66 254.6 184 68.5
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 7.9e-66 254.2 183 70.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.0e-65 253.8 184 69.0
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.3e-65 253.4 182 69.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.8e-65 253.1 181 68.0
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 2.3e-65 252.7 182 71.4
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 3.9e-65 251.9 182 68.1
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 5.1e-65 251.5 182 70.9
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 6.7e-65 251.1 184 67.9
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.7e-65 251.1 184 68.5
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 8.7e-65 250.8 181 68.0
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 8.7e-65 250.8 184 69.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 1.5e-64 250.0 182 67.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.9e-64 249.6 184 69.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.9e-64 249.6 184 67.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 4.3e-64 248.4 182 70.9
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 4.3e-64 248.4 184 68.5
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 7.4e-64 247.7 182 68.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 7.4e-64 247.7 184 69.6
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 7.4e-64 247.7 189 68.3
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 9.6e-64 247.3 183 69.9
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.3e-63 246.9 189 67.2
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.6e-63 246.5 182 68.7
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.6e-63 246.5 182 68.1
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.6e-63 246.5 186 68.3
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-63 246.1 184 67.4
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 4.8e-63 245.0 184 66.8
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.8e-63 245.0 184 66.8
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.8e-63 245.0 184 66.3
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-62 243.8 182 67.6
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-62 242.7 186 66.7
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-62 242.7 186 66.7
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-62 242.7 186 66.7
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 2.4e-62 242.7 184 66.8
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 2.4e-62 242.7 160 71.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.3e-62 241.5 189 66.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.2e-61 240.4 182 66.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.5e-61 240.0 182 67.6
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 4.5e-61 238.4 185 64.9
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.3e-60 236.9 185 65.4
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 2.2e-60 236.1 181 64.6
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 2.2e-60 236.1 185 65.9
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.9e-60 235.7 181 64.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.9e-60 235.7 183 63.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 6.4e-60 234.6 183 62.8
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 6.4e-60 234.6 181 63.5
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 8.4e-60 234.2 181 63.5
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.1e-59 233.8 184 66.3
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.4e-59 233.4 181 63.5
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.4e-59 233.4 181 64.6
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.4e-59 232.6 192 62.5
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.4e-59 232.6 183 64.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 5.5e-59 231.5 183 62.8
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 5.5e-59 231.5 185 64.3
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 9.3e-59 230.7 184 62.0
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 9.3e-59 230.7 184 65.2
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 6.0e-58 228.0 230 53.5
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 1.3e-57 226.9 184 62.5
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.8e-57 226.5 185 62.2
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.7e-57 224.6 182 60.4
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 6.7e-57 224.6 185 61.6
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 6.7e-57 224.6 184 62.5
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.1e-56 223.8 185 59.5
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.1e-56 223.8 183 58.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.1e-56 223.8 193 62.2
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.5e-56 223.4 183 60.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.9e-56 223.0 183 63.9
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.5e-56 222.6 172 66.9
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 7.4e-56 221.1 183 61.2
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-55 218.8 182 62.1
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 6.2e-55 218.0 183 62.3
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 6.2e-55 218.0 180 59.4
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 8.1e-55 217.6 183 61.7
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 8.1e-55 217.6 183 61.7
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.0e-54 215.3 186 58.6
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.0e-54 215.3 184 61.4
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 6.9e-54 214.5 184 62.5
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.4e-53 212.2 185 60.5
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.3e-52 210.3 153 68.6
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.9e-51 206.5 184 54.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.2e-51 205.3 193 56.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.5e-51 204.9 182 60.4
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.1e-50 203.0 182 53.3
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.0e-49 200.7 185 51.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.3e-49 199.5 186 55.9
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.0e-49 199.1 191 55.0
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.1e-48 197.2 184 52.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.9e-48 196.4 168 61.3
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.8e-46 189.9 216 46.3
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 9.0e-46 187.6 184 57.6
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 7.6e-45 184.5 187 52.4
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 5.0e-44 181.8 183 53.6
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 8.5e-44 181.0 181 49.2
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 2.3e-41 172.9 159 60.4
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.8e-38 163.3 185 51.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-37 160.2 138 59.4
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.9e-37 158.3 182 47.8
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.7e-36 156.8 151 54.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.2e-35 152.1 234 38.0
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 5.5e-35 151.8 130 59.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.3e-33 146.4 203 38.9
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 5.1e-33 145.2 185 43.2
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.5e-32 143.7 221 38.5
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.5e-32 143.7 179 49.2
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.6e-32 142.9 108 57.4
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.4e-32 141.4 140 52.9
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-31 140.6 114 63.2
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.7e-31 140.2 93 72.0
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.1e-30 137.5 176 47.2
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.4e-30 137.1 128 58.6
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-30 136.7 183 48.1
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 9.1e-30 134.4 165 46.1
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.5e-29 132.1 98 62.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 7.7e-29 131.3 180 40.6
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 8.5e-28 127.9 202 36.1
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.4e-24 115.5 106 55.7
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 4.2e-19 99.0 157 40.8
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-18 96.3 154 40.9
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 6.7e-17 91.7 115 48.7
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-16 90.9 149 40.3
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 5.7e-16 88.6 102 43.1
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 7.5e-16 88.2 110 50.0
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 9.7e-16 87.8 53 73.6
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.6e-13 80.5 74 55.4
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-12 77.4 73 53.4
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.1e-11 74.3 170 27.6
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 1.4e-06 57.4 107 28.0


User provided reference genes

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