Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.0e-131 473.4 240 100.0
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 4.7e-124 448.0 240 95.8
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.8e-107 391.0 242 82.6
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.3e-102 376.7 243 80.7
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 8.5e-102 374.0 246 79.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.1e-101 373.6 243 79.8
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 3.2e-101 372.1 241 80.1
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.8e-100 369.0 242 78.1
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 2.8e-100 369.0 243 78.2
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.7e-100 368.2 242 78.5
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 8.0e-100 367.5 244 77.5
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.0e-100 367.5 244 77.5
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.0e-100 367.5 244 77.5
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.3e-99 365.9 244 77.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 6.8e-99 364.4 242 77.3
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 6.8e-99 364.4 246 76.8
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.2e-98 363.6 242 76.9
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.0e-98 362.8 243 75.7
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.7e-98 361.3 244 77.5
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.7e-97 359.8 242 76.9
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.7e-97 359.8 242 76.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.7e-97 359.8 244 78.3
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.9e-97 358.2 244 75.8
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.9e-97 358.2 242 77.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.4e-96 355.9 242 77.3
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 5.4e-96 354.8 242 78.1
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 5.4e-96 354.8 242 77.7
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 2.0e-95 352.8 243 74.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.5e-95 352.1 244 75.0
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.3e-94 349.4 243 78.6
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 5.0e-94 348.2 244 73.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 8.6e-94 347.4 240 75.4
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.5e-93 345.9 250 73.2
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.1e-92 341.3 220 78.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.3e-91 339.3 253 71.9
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.3e-91 339.3 243 72.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 6.8e-91 337.8 242 73.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.9e-91 337.4 242 71.9
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.2e-90 337.0 244 73.8
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.5e-90 336.7 242 73.1
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.5e-90 336.7 234 72.2
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 2.6e-90 335.9 243 74.1
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 3.4e-90 335.5 243 72.0
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 4.4e-90 335.1 222 77.9
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 5.7e-90 334.7 243 73.3
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 5.7e-90 334.7 244 72.5
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.7e-89 333.2 216 76.9
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.9e-89 332.4 242 72.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 3.7e-89 332.0 243 72.4
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 6.4e-89 331.3 245 74.7
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-88 330.5 213 75.6
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.8e-88 329.7 243 71.2
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 2.4e-88 329.3 241 71.4
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.4e-88 329.3 226 75.7
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.4e-88 329.3 243 72.8
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 3.2e-88 328.9 242 70.2
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 5.4e-88 328.2 240 72.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 9.2e-88 327.4 243 72.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.2e-87 327.0 252 71.4
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 4.6e-87 325.1 235 72.3
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 5.9e-87 324.7 249 70.3
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 3.9e-86 322.0 242 69.0
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 5.0e-86 321.6 255 68.6
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 5.0e-86 321.6 242 69.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.5e-85 320.1 246 68.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.9e-85 319.7 252 67.9
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.9e-85 319.7 220 75.0
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 5.6e-85 318.2 213 73.7
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.2e-84 317.0 244 68.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.6e-84 316.6 242 67.8
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.1e-84 316.2 243 69.1
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.8e-84 315.8 204 77.5
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.6e-84 315.5 243 68.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.6e-84 315.5 253 68.8
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.7e-84 315.1 207 74.9
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 8.0e-84 314.3 193 80.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 8.9e-83 310.8 243 69.1
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.6e-82 309.3 219 73.1
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.4e-82 308.5 243 67.9
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 6.4e-81 304.7 209 74.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.1e-80 303.9 223 70.9
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.1e-80 303.9 189 78.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.9e-80 303.1 232 68.1
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.1e-80 302.0 222 70.7
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.2e-79 300.4 247 68.0
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 3.5e-79 298.9 203 70.9
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 4.6e-79 298.5 244 66.8
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 7.8e-79 297.7 243 65.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.0e-78 297.4 247 66.0
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.3e-78 297.0 194 75.3
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.7e-78 296.6 247 67.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 5.0e-78 295.0 247 67.2
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 4.3e-77 292.0 244 66.0
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.6e-77 291.6 217 71.9
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-76 290.4 252 65.1
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.2e-76 290.4 242 62.8
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.6e-76 290.0 254 65.0
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.8e-76 289.3 253 64.4
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 4.7e-76 288.5 231 63.2
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 8.1e-76 287.7 248 66.1
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 8.9e-75 284.3 244 61.5
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 2.6e-74 282.7 247 64.8
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.4e-74 282.3 197 73.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 5.8e-74 281.6 247 64.8
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-73 278.5 251 63.7
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 6.4e-73 278.1 246 63.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 6.4e-73 278.1 247 62.3
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 6.4e-73 278.1 246 63.0
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 8.3e-73 277.7 219 67.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.2e-72 275.8 194 71.1
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 3.9e-70 268.9 227 65.2
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 8.6e-70 267.7 195 74.9
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.1e-67 260.8 190 67.4
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 3.1e-67 259.2 251 58.6
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.2e-66 257.3 160 79.4
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.6e-62 241.5 204 66.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 4.8e-52 208.8 121 82.6
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 2.4e-51 206.5 121 81.0
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 4.0e-51 205.7 120 82.5
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.9e-49 199.5 182 58.8
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.8e-46 190.3 165 61.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.3e-45 185.7 207 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 7.4e-45 184.9 142 59.2
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 2.0e-42 176.8 111 73.9
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.6e-42 176.4 177 50.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.9e-38 162.5 196 46.4
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 9.6e-37 157.9 228 38.6
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.9e-29 133.7 176 38.1
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 6.5e-25 118.6 68 82.4
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 6.9e-19 98.6 102 56.9
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.2e-17 93.6 122 53.3
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.4e-16 90.9 145 32.4
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.0e-14 84.7 122 44.3
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 2.3e-14 83.6 192 31.8


User provided reference genes

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