Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.5e-128 464.5 237 100.0
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.5e-126 457.2 237 97.9
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.8e-124 451.1 237 97.5
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.0e-95 355.5 222 81.5
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 5.6e-94 349.7 237 73.4
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.0e-80 304.7 230 65.7
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 9.5e-78 295.8 234 64.1
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 2.8e-77 294.3 239 62.8
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 7.5e-75 286.2 230 63.0
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 9.8e-75 285.8 240 61.7
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 3.2e-73 280.8 234 63.7
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 7.1e-73 279.6 238 59.2
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 5.1e-71 273.5 225 63.6
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 2.5e-70 271.2 231 59.7
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 7.3e-70 269.6 231 58.9
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 2.1e-69 268.1 231 58.4
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.2e-69 266.5 231 58.0
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.1e-68 265.8 229 58.1
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 2.9e-66 257.7 228 61.4
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.9e-66 257.7 231 57.6
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 6.4e-66 256.5 209 61.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 7.1e-65 253.1 229 59.0
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 1.6e-64 251.9 228 58.8
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.3e-63 248.1 224 60.3
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 1.1e-62 245.7 240 56.2
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.1e-62 245.7 236 55.5
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 5.6e-62 243.4 237 55.3
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.6e-61 241.9 216 58.3
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 5.2e-60 236.9 240 55.4
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 2.0e-59 235.0 239 55.2
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 2.0e-59 235.0 236 54.2
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.3e-58 232.3 243 54.3
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 4.9e-58 230.3 248 50.8
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 6.4e-58 229.9 227 55.9
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.4e-57 228.8 216 56.5
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.9e-57 228.4 239 53.6
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 3.2e-57 227.6 239 52.3
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 4.2e-57 227.3 238 55.0
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 9.3e-57 226.1 237 54.9
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.2e-56 225.7 239 51.5
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 2.7e-56 224.6 239 51.0
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 7.8e-56 223.0 225 54.2
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 1.0e-55 222.6 234 51.7
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 3.0e-55 221.1 231 49.4
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.1e-54 219.2 240 50.8
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.1e-54 219.2 240 50.8
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.1e-54 219.2 227 53.7
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 5.6e-54 216.9 239 50.6
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 3.6e-53 214.2 227 53.3
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.1e-52 212.6 238 50.4
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.8e-52 211.8 235 50.6
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 5.3e-52 210.3 238 50.0
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 5.3e-52 210.3 238 50.0
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 9.0e-52 209.5 222 52.7
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 9.0e-52 209.5 207 51.7
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 2.0e-51 208.4 238 49.6
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.0e-51 208.4 224 49.6
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.0e-51 208.4 213 54.5
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 4.9e-50 203.8 233 49.4
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.9e-49 201.8 138 71.0
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 3.2e-49 201.1 224 49.6
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 7.1e-49 199.9 238 50.0
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.0e-47 196.1 224 47.8
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.3e-47 195.7 224 47.8
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.8e-47 195.3 224 47.3
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 8.7e-47 193.0 224 47.8
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.6e-46 190.3 234 49.1
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 1.3e-45 189.1 234 46.6
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 2.1e-45 188.3 229 49.8
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 2.8e-45 188.0 168 54.8
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.8e-45 188.0 221 51.1
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-44 184.9 228 48.7
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 5.8e-43 180.3 230 49.1
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 7.6e-43 179.9 139 64.7
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.9e-42 177.9 233 48.5
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.9e-41 175.3 231 43.3
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 3.2e-41 174.5 154 54.5
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.9e-38 165.2 162 51.9
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.9e-38 165.2 162 51.9
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 6.2e-37 160.2 162 50.6
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 1.5e-35 155.6 176 51.1
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 1.0e-34 152.9 237 41.8
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.2e-34 151.8 232 42.7
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-34 151.0 234 45.7
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 6.0e-32 143.7 197 45.2
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 7.9e-32 143.3 202 44.1
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-31 142.1 147 54.4
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 1.8e-31 142.1 151 49.7
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 1.1e-28 132.9 118 60.2
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 5.9e-27 127.1 84 69.0
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 7.6e-27 126.7 217 44.7
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.1e-25 122.9 84 64.3
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.4e-25 122.5 231 38.5
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 3.0e-23 114.8 85 63.5
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-20 105.1 86 58.1
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.4e-20 105.1 82 57.3
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.3e-20 104.0 231 35.1
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 4.5e-19 100.9 230 39.6
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 7.7e-19 100.1 79 59.5
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 7.7e-19 100.1 97 53.6
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 1.4e-17 95.9 85 55.3
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.9e-17 95.5 76 65.8
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 1.6e-16 92.4 67 62.7
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 3.6e-16 91.3 80 57.5
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.9e-16 90.1 71 69.0
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.3e-15 88.6 73 61.6
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 3.9e-15 87.8 81 51.9
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.4e-14 84.3 74 52.7
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.4e-14 84.3 74 52.7
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 7.4e-14 83.6 78 55.1
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.7e-13 81.3 137 36.5
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 4.8e-13 80.9 60 60.0
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.8e-13 80.9 60 60.0
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-12 79.3 60 60.0
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.8e-12 79.0 137 36.5
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.4e-12 78.6 54 66.7
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 2.4e-12 78.6 67 53.7
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 2.4e-12 78.6 214 30.4
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.0e-11 75.5 141 37.6
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.6e-11 75.1 184 28.8
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 1.3e-10 72.8 64 53.1
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-10 71.2 52 63.5
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 5.0e-10 70.9 170 30.6
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.2e-08 66.2 164 27.4
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 2.7e-08 65.1 69 52.2
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 4.7e-08 64.3 54 57.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.4e-07 62.8 189 29.1
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-07 62.8 54 55.6
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-07 62.4 54 55.6
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 1.8e-07 62.4 103 33.0
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.8e-07 62.4 147 25.9
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.0e-07 61.6 105 33.3
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 5.2e-07 60.8 70 47.1
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.1e-06 59.7 218 30.3
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 1.1e-06 59.7 99 34.3
arahy.Tifrunner.gnm1.ann1.PQP9HM Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-06 59.3 100 42.0
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 2.6e-06 58.5 229 25.8
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 7.4e-06 57.0 218 24.3
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 7.4e-06 57.0 189 27.5
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 9.7e-06 56.6 106 32.1


User provided reference genes

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