Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001593 Carpinus fangiana HOM05D003265 ORTHO05D003819 0.0e+00 2309.6 1202 100.0
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 1.1e-293 1013.8 692 81.4
Cfa001590 Carpinus fangiana HOM05D000855 ORTHO05D002321 5.2e-256 888.6 617 79.6
Haze_16938 Corylus avellana HOM05D000855 ORTHO05D002321 1.8e-237 827.0 617 76.3
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 1.5e-159 568.2 790 49.7
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 3.2e-133 480.7 749 46.3
QL08p056900 Quercus lobata HOM05D000855 ORTHO05D002321 2.3e-118 431.4 512 53.5
CiPaw.02G176700 Carya illinoinensis HOM05D000855 ORTHO05D002321 3.2e-88 331.3 486 46.1
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 1.3e-78 299.3 724 36.0
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 2.1e-76 292.0 781 35.3
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 3.9e-70 271.2 728 36.5
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.4e-67 262.7 729 34.4
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 4.2e-64 251.1 688 34.9
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 3.9e-62 244.6 696 36.1
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 2.5e-61 241.9 712 33.6
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.4e-59 235.3 729 34.4
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.3e-59 234.2 693 34.1
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.9e-59 233.8 616 36.9
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.4e-58 231.5 728 33.7
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 5.5e-56 224.2 659 34.4
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.3e-54 219.5 718 33.4
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.1e-53 216.5 679 32.5
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 8.2e-52 210.3 565 35.2
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 4.2e-48 198.0 533 37.0
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 4.6e-47 194.5 681 31.3
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.4e-46 193.0 664 33.3
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 8.8e-46 190.3 566 34.1
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.4e-40 172.9 690 30.4
Sabra08G0030800 Salix brachista HOM05D003265 ORTHO05D003819 2.1e-39 169.1 661 30.1
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.1e-37 163.3 534 31.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.7e-36 159.5 638 31.5
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 6.3e-36 157.5 645 30.2
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 3.1e-35 155.2 534 32.8
Ciclev10033690m.g Citrus clementina HOM05D003265 ORTHO05D003819 2.0e-34 152.5 662 29.0
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.0e-34 152.5 565 31.2
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.5e-34 151.8 709 29.1
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 1.0e-33 150.2 522 33.7
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.9e-33 148.7 656 28.7
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 5.0e-33 147.9 688 29.8
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 8.5e-33 147.1 470 33.0
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.5e-32 145.6 707 28.3
Atru.chr12.631 Acer truncatum HOM05D000855 ORTHO05D002321 8.8e-30 137.1 373 31.4
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.8e-30 137.1 517 32.5
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 5.7e-29 134.4 669 29.1
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.2e-28 132.5 500 33.0
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.2e-28 130.6 695 26.6
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 2.7e-26 125.6 516 31.4
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 3.5e-26 125.2 575 29.7
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 7.7e-26 124.0 519 32.0
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.0e-25 123.6 623 27.8
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 2.5e-24 119.0 187 41.7
CSS0010994 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 4.2e-24 118.2 546 26.9
Dinv31338 Davidia involucrata HOM05D000855 ORTHO05D002321 7.2e-24 117.5 527 28.1
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 1.2e-23 116.7 513 30.0
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.6e-23 115.2 527 31.1
VMungo0464G0131 Vigna mungo HOM05D003265 ORTHO05D003819 6.1e-23 114.4 643 26.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.8e-22 112.8 536 30.4
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.0e-22 111.7 462 31.2
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 5.2e-22 111.3 527 31.5
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.2e-21 110.2 540 29.8
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.5e-21 109.8 672 26.5
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 2.0e-21 109.4 544 28.1
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.4e-21 108.6 550 28.2
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.5e-21 107.5 539 29.9
Manes.10G041700 Manihot esculenta HOM05D000855 ORTHO05D002321 7.5e-21 107.5 509 25.7
Ciclev10030525m.g Citrus clementina HOM05D000855 ORTHO05D002321 2.8e-20 105.5 534 25.1
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.7e-20 105.1 497 31.0
Prupe.2G219200 Prunus persica HOM05D000855 ORTHO05D002321 4.8e-20 104.8 524 28.4
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 4.8e-20 104.8 585 27.5
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 6.3e-20 104.4 501 29.5
CSS0024766 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.3e-20 104.0 455 29.0
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.3e-20 104.0 837 25.0
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.1e-19 103.6 575 28.0
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.4e-19 102.4 483 28.4
Sabra08G0030900 Salix brachista HOM05D000855 ORTHO05D002321 3.1e-19 102.1 460 26.7
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.1e-19 101.7 931 23.8
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 4.1e-19 101.7 587 28.3
RcHm_v2.0_Chr1g0364181 Rosa chinensis HOM05D000855 ORTHO05D002321 4.1e-19 101.7 396 29.3
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 5.4e-19 101.3 562 28.1
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 1.6e-18 99.8 188 39.4
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 2.0e-18 99.4 598 27.9
CSS0007490 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.5e-18 98.6 501 27.7
Potri.010G216900 Populus trichocarpa HOM05D000855 ORTHO05D002321 5.9e-18 97.8 459 28.3
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.0e-17 97.1 604 28.6
Phvul.004G075600 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 1.3e-17 96.7 179 40.8
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.7e-17 96.3 518 27.0
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 2.9e-17 95.5 530 28.7
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 2.9e-17 95.5 551 28.7
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 8.6e-17 94.0 548 27.4
THA.LOC104824221 Tarenaya hassleriana HOM05D003265 ORTHO05D013953 8.6e-17 94.0 230 34.3
TWI38G0064 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 1.1e-16 93.6 436 26.6
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 1.9e-16 92.8 545 27.9
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 4.2e-16 91.7 560 28.2
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.2e-15 90.1 601 28.1
Dinv31341 Davidia involucrata HOM05D000855 ORTHO05D002321 1.2e-15 90.1 148 38.5
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.6e-15 89.7 578 27.5
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.6e-15 89.7 513 26.1
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.1e-15 89.4 473 29.2
Manes.10G041900 Manihot esculenta HOM05D000855 ORTHO05D002321 2.8e-15 89.0 471 27.8
Sabra10G0167800 Salix brachista HOM05D000855 ORTHO05D002321 2.8e-15 89.0 518 26.4
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.6e-15 88.6 570 26.5
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 6.1e-15 87.8 517 28.6
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 2.3e-14 85.9 652 25.2
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 3.0e-14 85.5 230 34.8
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 5.2e-14 84.7 371 31.0
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 6.8e-14 84.3 647 26.4
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.8e-14 84.3 575 26.3
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 8.8e-14 84.0 559 26.3
Potri.008G044600 Populus trichocarpa HOM05D000855 ORTHO05D002321 8.8e-14 84.0 454 26.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.2e-13 83.6 255 33.7
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.5e-13 83.2 476 30.5
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 2.0e-13 82.8 604 26.0
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.0e-13 82.8 496 27.8
AL4G36200 Arabidopsis lyrata HOM05D013918 ORTHO05D013953 3.4e-13 82.0 111 45.9
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 7.5e-13 80.9 574 27.9
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 9.8e-13 80.5 466 29.6
MD01G1112200 Malus domestica HOM05D000855 ORTHO05D002321 1.3e-12 80.1 421 25.9
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 2.2e-12 79.3 489 27.2
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 2.2e-12 79.3 599 26.7
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 4.9e-12 78.2 537 28.1
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 4.9e-12 78.2 567 27.5
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.1e-11 77.0 394 31.5
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 1.8e-11 76.3 597 25.8
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.8e-11 76.3 484 26.9
Thhalv10017720m.g Eutrema salsugineum HOM05D013918 ORTHO05D013953 2.4e-11 75.9 106 44.3
BcaB01g03624 Brassica carinata HOM05D000297 ORTHO05D013953 3.1e-11 75.5 97 46.4
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 3.1e-11 75.5 434 26.7
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 7.0e-11 74.3 488 28.3
C03p25710 Brassica napus HOM05D000297 ORTHO05D013953 3.5e-10 72.0 137 40.1
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 4.5e-10 71.6 599 27.7
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 5.9e-10 71.2 589 26.8
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 5.9e-10 71.2 442 28.3
TWI15G0675 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 5.9e-10 71.2 281 29.9
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 1.0e-09 70.5 481 26.6
Lj2g0001742 Lotus japonicus HOM05D003265 ORTHO05D003819 1.0e-09 70.5 123 39.0
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 1.0e-09 70.5 213 32.9
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.0e-09 70.5 442 28.1
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.7e-09 69.7 457 28.4
BolC3t14959H Brassica oleracea HOM05D013918 ORTHO05D013953 2.3e-09 69.3 111 43.2
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.3e-09 69.3 495 26.7
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.8e-09 68.6 60 55.0
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 5.0e-09 68.2 626 27.3
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 5.0e-09 68.2 451 27.9
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 6.6e-09 67.8 77 46.8
A03p21720 Brassica napus HOM05D013918 ORTHO05D013953 6.6e-09 67.8 261 29.1
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 6.6e-09 67.8 667 22.5
BraA03t11406Z Brassica rapa HOM05D000297 ORTHO05D013953 8.6e-09 67.4 214 30.8
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 1.5e-08 66.6 630 25.9
MD01G1131600 Malus domestica HOM05D003265 ORTHO05D003819 2.5e-08 65.9 214 33.6
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.3e-08 65.5 499 26.7
MD07G1179800 Malus domestica HOM05D000855 ORTHO05D002321 3.3e-08 65.5 505 24.0
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.3e-08 65.1 499 26.7
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 5.6e-08 64.7 506 26.1
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 5.6e-08 64.7 391 29.9
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 5.6e-08 64.7 536 25.6
BcaC01g05505 Brassica carinata HOM05D013918 ORTHO05D013953 7.3e-08 64.3 105 40.0
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 7.3e-08 64.3 505 24.4
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.5e-08 63.9 167 31.1
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 9.5e-08 63.9 568 27.1
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 9.5e-08 63.9 236 30.9
HanXRQChr09g0246531 Helianthus annuus HOM05D014857 ORTHO05D015078 1.2e-07 63.5 474 27.8
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.2e-07 63.5 267 28.8
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 1.6e-07 63.2 613 23.2
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 2.1e-07 62.8 477 27.9
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 2.1e-07 62.8 482 27.8
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 6.1e-07 61.2 454 26.0
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 6.1e-07 61.2 567 26.1
ECA246G3041 Erigeron canadensis HOM05D003265 ORTHO05D003819 1.0e-06 60.5 406 26.8
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.4e-06 60.1 165 31.5
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.8e-06 59.7 618 23.5
Lj1C924G11 Lonicera japonica HOM05D000855 ORTHO05D001431 1.8e-06 59.7 380 23.9
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 4.0e-06 58.5 573 23.9
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 5.2e-06 58.2 433 25.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 6.8e-06 57.8 452 28.3
Cc09_g02720 Coffea canephora HOM05D014857 ORTHO05D015078 6.8e-06 57.8 109 40.4
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 6.8e-06 57.8 510 26.1
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 8.9e-06 57.4 570 23.7


User provided reference genes

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