Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001589 Carpinus fangiana HOM05D000903 ORTHO05D000731 3.0e-41 171.4 86 100.0
Haze_16131 Corylus avellana HOM05D000903 ORTHO05D000731 1.2e-34 149.4 85 87.1
Cfa003465 Carpinus fangiana HOM05D000903 ORTHO05D000731 6.1e-34 147.1 85 84.7
CiPaw.01G211900 Carya illinoinensis HOM05D000903 ORTHO05D000731 3.2e-27 124.8 84 73.8
QL05p001282 Quercus lobata HOM05D000903 ORTHO05D000731 5.7e-24 114.0 85 62.4
CiPaw.02G131400 Carya illinoinensis HOM05D000903 ORTHO05D000731 6.3e-23 110.5 85 62.4
Potri.001G163200 Populus trichocarpa HOM05D000903 ORTHO05D000731 1.0e-17 93.2 85 54.1
Potri.003G072300 Populus trichocarpa HOM05D000903 ORTHO05D000731 3.4e-16 88.2 85 54.1
Manes.04G150500 Manihot esculenta HOM05D000903 ORTHO05D000731 4.4e-16 87.8 85 52.9
Manes.11G013100 Manihot esculenta HOM05D000903 ORTHO05D000731 5.7e-16 87.4 85 51.8
Sabra03G0043100 Salix brachista HOM05D000903 ORTHO05D000731 4.8e-15 84.3 85 55.3
Sabra01G0129500 Salix brachista HOM05D000903 ORTHO05D000731 8.3e-15 83.6 85 49.4
Actinidia21831 Actinidia chinensis HOM05D000903 ORTHO05D000731 9.1e-14 80.1 85 50.6
Prupe.3G031400 Prunus persica HOM05D000903 ORTHO05D000731 3.5e-13 78.2 83 49.4
vmacro15083 Vaccinium macrocarpon HOM05D000903 ORTHO05D000731 5.9e-13 77.4 85 50.6
Dinv37822 Davidia involucrata HOM05D000903 ORTHO05D000731 1.3e-12 76.3 85 51.8
MD09G1173300 Malus domestica HOM05D000903 ORTHO05D000731 2.9e-12 75.1 83 50.6
Oeu006747.1 Olea europaea HOM05D000903 ORTHO05D000731 3.8e-12 74.7 85 47.1
Thhalv10019882m.g Eutrema salsugineum HOM05D000903 ORTHO05D000731 5.0e-12 74.3 85 47.1
AT3G14270 Arabidopsis thaliana HOM05D000903 ORTHO05D000731 6.6e-12 73.9 85 47.1
TWI14G0698 Tripterygium wilfordii HOM05D000903 ORTHO05D000731 6.6e-12 73.9 85 42.4
Cpa.g.sc25.186 Carica papaya HOM05D000903 ORTHO05D000731 8.6e-12 73.6 85 44.7
Lj5A30G68 Lonicera japonica HOM05D000903 ORTHO05D000731 8.6e-12 73.6 85 48.2
AL3G26590 Arabidopsis lyrata HOM05D000903 ORTHO05D000731 1.1e-11 73.2 85 47.1
MD17G1154000 Malus domestica HOM05D000903 ORTHO05D000731 1.1e-11 73.2 83 48.2
Oeu006745.1 Olea europaea HOM05D000903 ORTHO05D000731 1.1e-11 73.2 85 47.1
Rhsim08G0244300 Rhododendron simsii HOM05D000903 ORTHO05D000731 7.2e-11 70.5 85 47.1
THA.LOC104810391 Tarenaya hassleriana HOM05D000903 ORTHO05D000731 7.2e-11 70.5 85 43.5
Dinv20387 Davidia involucrata HOM05D000903 ORTHO05D000731 9.5e-11 70.1 85 48.2
RcHm_v2.0_Chr2g0147811 Rosa chinensis HOM05D000903 ORTHO05D000731 9.5e-11 70.1 85 44.7
Aa31LG8G1540 Aethionema arabicum HOM05D000903 ORTHO05D000731 1.6e-10 69.3 85 40.0
CARHR089200 Cardamine hirsuta HOM05D000903 ORTHO05D000731 1.6e-10 69.3 85 43.5
Ca_23432_v3 Cicer arietinum L. HOM05D000903 ORTHO05D000731 1.6e-10 69.3 84 44.0
Psat4g165520 Pisum sativum HOM05D000903 ORTHO05D000731 2.1e-10 68.9 83 42.2
Ciclev10027324m.g Citrus clementina HOM05D000903 ORTHO05D000731 2.8e-10 68.6 84 41.7
Lalb_Chr04g0253911 Lupinus albus HOM05D000903 ORTHO05D000731 2.8e-10 68.6 85 43.5
Glyma.07G045600 Glycine max HOM05D000903 ORTHO05D000731 3.6e-10 68.2 83 44.6
Medtr8g023080 Medicago truncatula HOM05D000903 ORTHO05D000731 4.7e-10 67.8 83 42.2
Sp3g12580 Schrenkiella parvula HOM05D000903 ORTHO05D000731 4.7e-10 67.8 85 43.5
Lj9C538G1 Lonicera japonica HOM05D000903 ORTHO05D000731 6.1e-10 67.4 91 47.3
Oeu013439.1 Olea europaea HOM05D000903 ORTHO05D000731 8.0e-10 67.0 82 43.9
CSS0007576 Camellia sinensis var. sinensis HOM05D000903 ORTHO05D000731 1.0e-09 66.6 85 43.5
CSS0024812 Camellia sinensis var. sinensis HOM05D000903 ORTHO05D000731 1.0e-09 66.6 85 43.5
Carub.0003s1396 Capsella rubella HOM05D000903 ORTHO05D000731 1.0e-09 66.6 85 43.5
Dinv25500 Davidia involucrata HOM05D000903 ORTHO05D000731 2.3e-09 65.5 86 39.5
Duzib160G0119 Durio zibethinus HOM05D000903 ORTHO05D000731 2.3e-09 65.5 83 42.2
Lalb_Chr17g0343261 Lupinus albus HOM05D000903 ORTHO05D000731 4.0e-09 64.7 83 39.8
Hund08906 Selenicereus undatus HOM05D000903 ORTHO05D000731 5.2e-09 64.3 85 40.0
Nn8g38523 Nelumbo nucifera HOM05D000903 ORTHO05D000731 6.8e-09 63.9 86 36.0
THA.LOC104816059 Tarenaya hassleriana HOM05D000903 ORTHO05D000731 6.8e-09 63.9 85 43.5
DCAR_007658 Daucus carota HOM05D000903 ORTHO05D000731 2.0e-08 62.4 83 39.8
A01p39440 Brassica napus HOM05D000903 ORTHO05D000731 2.6e-08 62.0 85 41.2
Cc04_g00770 Coffea canephora HOM05D000903 ORTHO05D000731 2.6e-08 62.0 85 41.2
Eucgr.J02598 Eucalyptus grandis HOM05D000903 ORTHO05D000731 3.4e-08 61.6 84 40.5
Gohir.A10G050500 Gossypium hirsutum HOM05D000903 ORTHO05D000731 3.4e-08 61.6 83 39.8
BcaC09g48396 Brassica carinata HOM05D000903 ORTHO05D000731 4.4e-08 61.2 85 40.0
Gohir.D10G052000 Gossypium hirsutum HOM05D000903 ORTHO05D000731 7.5e-08 60.5 83 38.6
Peaxi162Scf00038g02250 Petunia axillaris HOM05D000903 ORTHO05D000731 7.5e-08 60.5 85 43.5
Thecc.06G129600 Theobroma cacao HOM05D000903 ORTHO05D000731 7.5e-08 60.5 84 44.0
BcaB04g18834 Brassica carinata HOM05D000903 ORTHO05D000731 9.8e-08 60.1 85 45.9
Glyma.16G013500 Glycine max HOM05D000903 ORTHO05D000731 9.8e-08 60.1 83 41.0
Nn6g35723 Nelumbo nucifera HOM05D000903 ORTHO05D000731 9.8e-08 60.1 85 37.6
Sopen12g024070 Solanum pennellii HOM05D000903 ORTHO05D000731 9.8e-08 60.1 85 41.2
Phvul.010G123500 Phaseolus vulgaris HOM05D000903 ORTHO05D000731 1.3e-07 59.7 83 38.6
Lj3g0023583 Lotus japonicus HOM05D000903 ORTHO05D000731 1.7e-07 59.3 83 38.6
VMungo0331G1956 Vigna mungo HOM05D000903 ORTHO05D000731 2.2e-07 58.9 83 42.2
GSVIVG01016674001 Vitis vinifera HOM05D000903 ORTHO05D000731 2.2e-07 58.9 40 65.0
Gorai.011G055600 Gossypium raimondii HOM05D000903 ORTHO05D000731 2.8e-07 58.5 83 38.6
Lalb_Chr18g0044891 Lupinus albus HOM05D000903 ORTHO05D000731 2.8e-07 58.5 82 39.0
FAN02G2467 Fragaria x ananassa HOM05D000903 ORTHO05D000731 3.7e-07 58.2 85 40.0
FAN14G4778 Fragaria x ananassa HOM05D000903 ORTHO05D000731 3.7e-07 58.2 85 40.0
BraA01t03984Z Brassica rapa HOM05D000903 ORTHO05D000731 4.9e-07 57.8 86 40.7
COL.COLO4_21197 Corchorus olitorius HOM05D000903 ORTHO05D000731 4.9e-07 57.8 84 35.7
Lalb_Chr15g0076721 Lupinus albus HOM05D000903 ORTHO05D000731 4.9e-07 57.8 81 39.5
MBI19_g32868_MAGBIO Magnolia biondii HOM05D000903 ORTHO05D000731 4.9e-07 57.8 86 34.9
CANSAT56G1400 Cannabis sativa HOM05D000903 ORTHO05D000731 6.3e-07 57.4 85 44.7
COL.COLO4_30859 Corchorus olitorius HOM05D000903 ORTHO05D000731 6.3e-07 57.4 83 41.0
QL11p003280 Quercus lobata HOM05D000903 ORTHO05D000731 6.3e-07 57.4 85 38.8
BcaC05g29465 Brassica carinata HOM05D000903 ORTHO05D000731 8.3e-07 57.0 85 43.5
C03p27290 Brassica napus HOM05D000903 ORTHO05D000731 8.3e-07 57.0 85 43.5
Nitab4.5_0000357g0120 Nicotiana tabacum HOM05D000903 ORTHO05D000731 8.3e-07 57.0 85 40.0
FAN05G4582 Fragaria x ananassa HOM05D000903 ORTHO05D000731 1.1e-06 56.6 85 40.0
Oeu000380.2 Olea europaea HOM05D000903 ORTHO05D000731 1.1e-06 56.6 82 40.2
BcaC01g03940 Brassica carinata HOM05D000903 ORTHO05D000731 1.4e-06 56.2 85 43.5
C03p46870 Brassica napus HOM05D000903 ORTHO05D000731 1.4e-06 56.2 85 43.5
BolC3t16953H Brassica oleracea HOM05D000903 ORTHO05D000731 1.4e-06 56.2 85 43.5
Duzib235G0423 Durio zibethinus HOM05D000903 ORTHO05D000731 1.4e-06 56.2 83 38.6
Nitab4.5_0004589g0020 Nicotiana tabacum HOM05D000903 ORTHO05D000731 1.8e-06 55.8 85 41.2
Aqoxy7G04177 Aquilegia oxysepala HOM05D000903 ORTHO05D000731 2.4e-06 55.5 90 40.0
Gorai.006G090300 Gossypium raimondii HOM05D000903 ORTHO05D000731 2.4e-06 55.5 83 41.0
Sc15g0000790 Simmondsia chinensis HOM05D000903 ORTHO05D000731 2.4e-06 55.5 84 42.9
EL10Ac7g16491 Beta vulgaris HOM05D000903 ORTHO05D000731 3.1e-06 55.1 85 40.0
A03p38730 Brassica napus HOM05D000903 ORTHO05D000731 3.1e-06 55.1 85 42.4
BraA03t13021Z Brassica rapa HOM05D000903 ORTHO05D000731 3.1e-06 55.1 85 42.4
FvH4_6g35770 Fragaria vesca HOM05D000903 ORTHO05D000731 4.1e-06 54.7 85 38.8
FAN09G3590 Fragaria x ananassa HOM05D000903 ORTHO05D000731 4.1e-06 54.7 85 38.8
FAN14G3814 Fragaria x ananassa HOM05D000903 ORTHO05D000731 4.1e-06 54.7 85 38.8
Solyc12g049590.2 Solanum lycopersicum HOM05D000903 ORTHO05D000731 4.1e-06 54.7 85 41.2
Duzib168G0371 Durio zibethinus HOM05D000903 ORTHO05D000731 7.0e-06 53.9 84 34.5
SGA_v2.0_scaffold71G23918 Striga asiatica HOM05D000903 ORTHO05D000731 7.0e-06 53.9 83 37.3
Gohir.A09G075500 Gossypium hirsutum HOM05D000903 ORTHO05D000731 9.2e-06 53.5 83 39.8


User provided reference genes

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