Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 7.4e-214 746.9 364 100.0
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 3.2e-161 572.0 365 78.4
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 1.4e-151 540.0 366 75.4
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 2.3e-138 496.1 363 66.4
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 5.6e-129 464.9 359 64.6
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.7e-128 461.8 358 63.7
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 6.2e-128 461.5 362 61.3
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 8.1e-128 461.1 358 64.5
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.1e-127 460.7 358 64.0
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 1.1e-127 460.7 364 61.8
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 1.8e-127 459.9 359 61.0
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 6.8e-127 458.0 355 64.5
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 2.0e-126 456.4 355 63.9
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 2.0e-126 456.4 361 63.7
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 9.9e-126 454.1 358 63.7
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 2.2e-125 453.0 366 63.1
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 1.9e-124 449.9 377 57.8
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.4e-124 449.5 362 59.1
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 2.4e-124 449.5 363 59.8
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 3.2e-124 449.1 359 63.2
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 7.1e-124 448.0 364 61.0
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 1.2e-123 447.2 371 60.4
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 1.2e-123 447.2 363 58.4
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 1.6e-123 446.8 228 95.6
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.6e-123 446.8 358 62.3
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.6e-123 445.3 355 63.4
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 7.8e-123 444.5 344 64.2
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.9e-122 442.2 361 62.6
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 1.1e-121 440.7 363 59.0
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 4.3e-121 438.7 374 58.8
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 1.4e-119 433.7 362 59.1
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 3.1e-119 432.6 336 62.5
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 6.8e-119 431.4 333 62.2
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 1.2e-118 430.6 346 61.6
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 2.9e-117 426.0 332 60.8
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 2.9e-117 426.0 354 58.2
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 3.2e-116 422.5 371 57.7
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 9.2e-116 421.0 363 58.1
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.6e-115 420.2 360 58.1
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.3e-114 417.2 364 58.0
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 1.7e-114 416.8 334 62.3
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 6.6e-114 414.8 356 59.6
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 6.6e-114 414.8 360 56.4
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 3.3e-113 412.5 364 56.9
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 1.3e-112 410.6 359 57.4
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 2.1e-112 409.8 365 55.3
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 3.6e-112 409.1 365 55.3
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 3.6e-112 409.1 356 57.3
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 6.2e-112 408.3 353 58.4
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 6.9e-111 404.8 359 54.6
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 2.6e-110 402.9 346 59.0
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 7.6e-110 401.4 348 56.6
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 1.3e-109 400.6 365 55.3
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.3e-109 400.6 366 57.7
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 2.2e-109 399.8 362 54.4
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 2.9e-109 399.4 360 55.0
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.1e-108 397.5 359 53.8
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 1.1e-108 397.5 363 55.4
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.9e-108 396.7 310 63.9
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 2.1e-107 393.3 369 58.0
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 7.8e-107 391.3 302 64.2
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 7.8e-107 391.3 370 54.1
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 5.1e-106 388.7 302 64.2
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 2.5e-105 386.3 370 57.0
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 4.8e-104 382.1 370 55.9
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 6.9e-103 378.3 368 55.2
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.2e-102 377.5 384 54.2
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.4e-100 370.5 368 54.9
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 1.9e-100 370.2 374 54.3
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 2.4e-100 369.8 370 56.5
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 9.3e-100 367.9 370 55.1
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 6.0e-99 365.2 365 54.8
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.3e-98 364.0 351 56.1
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.3e-98 364.0 362 52.5
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 2.3e-98 363.2 337 55.2
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 4.3e-97 359.0 286 63.6
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 7.4e-97 358.2 351 55.6
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.4e-95 353.2 315 57.5
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 4.9e-93 345.5 252 66.3
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 2.7e-91 339.7 276 62.0
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 1.0e-90 337.8 272 63.2
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 3.9e-90 335.9 322 57.8
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 2.5e-89 333.2 349 49.0
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 9.6e-89 331.3 272 61.8
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 4.8e-88 328.9 276 58.3
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.4e-87 327.4 270 59.6
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 3.8e-85 319.3 368 48.9
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 4.9e-85 318.9 345 49.9
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.2e-84 316.2 263 58.6
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 6.7e-82 308.5 287 54.0
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 2.4e-79 300.1 336 47.3
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 3.2e-76 289.7 348 47.7
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 1.3e-72 277.7 302 52.3
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 1.3e-64 251.1 275 53.1
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 3.1e-63 246.5 333 42.0
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.1e-57 228.0 191 60.7
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 1.5e-57 227.6 171 63.7
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 2.0e-57 227.3 276 48.2
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 4.8e-56 222.6 369 37.9
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 4.8e-56 222.6 272 46.0
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.8e-55 220.7 359 37.0
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 4.4e-49 199.5 327 37.3
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 4.8e-48 196.1 348 37.1
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 6.5e-45 185.7 357 34.2
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 7.5e-41 172.2 218 47.2
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 8.6e-37 158.7 224 42.9
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 1.9e-36 157.5 223 44.8
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 2.8e-35 153.7 161 48.4
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 6.8e-34 149.1 133 63.2
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.9e-32 143.7 236 43.2
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 2.8e-27 127.1 90 64.4
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 3.1e-26 123.6 381 29.7
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 1.7e-24 117.9 84 58.3
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 8.3e-24 115.5 117 52.1
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.9e-21 106.7 83 54.2
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-17 93.2 68 69.1
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 3.7e-16 90.1 91 42.9
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 7.1e-15 85.9 67 50.7
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 6.6e-13 79.3 353 26.9
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 8.6e-13 79.0 207 29.5
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 2.5e-12 77.4 63 61.9
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 2.1e-11 74.3 161 34.2
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 3.1e-10 70.5 36 88.9
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 2.6e-09 67.4 46 60.9
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 3.2e-07 60.5 132 34.1
CSS0021713 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 4.6e-06 56.6 41 65.9
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 4.6e-06 56.6 58 51.7


User provided reference genes

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