Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.6e-95 351.3 186 100.0
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 9.1e-59 230.7 227 63.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.0e-57 227.3 196 66.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.0e-57 224.9 227 63.0
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.0e-46 189.1 228 52.6
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.1e-35 154.1 235 44.3
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.4e-35 152.9 226 46.5
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 5.3e-35 151.8 226 45.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 9.1e-35 151.0 226 45.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 9.1e-35 151.0 226 46.0
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 2.0e-34 149.8 232 50.0
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.0e-33 147.5 236 45.8
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.3e-33 147.1 234 42.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.8e-33 145.6 238 42.4
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 6.5e-33 144.8 233 43.3
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.9e-32 143.3 234 43.2
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.9e-32 143.3 229 48.5
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 2.5e-32 142.9 235 47.7
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.5e-32 142.9 226 46.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 4.2e-32 142.1 234 43.2
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 5.5e-32 141.7 229 48.0
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 5.5e-32 141.7 224 41.5
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 7.2e-32 141.4 226 41.6
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 9.4e-32 141.0 237 44.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.4e-32 141.0 234 47.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.6e-31 140.2 236 45.3
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.6e-31 140.2 232 43.1
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.1e-31 139.8 239 46.4
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 6.1e-31 138.3 226 42.9
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 8.0e-31 137.9 220 41.8
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.0e-30 137.5 230 42.2
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.8e-30 136.7 234 41.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.3e-30 136.3 236 41.5
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 6.8e-30 134.8 228 45.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.0e-29 133.3 232 43.5
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 7.5e-29 131.3 224 43.3
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 7.5e-29 131.3 231 41.1
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.8e-29 131.0 219 43.8
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 9.8e-29 131.0 233 40.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 9.8e-29 131.0 231 41.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 9.8e-29 131.0 231 41.1
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.3e-28 130.6 218 42.2
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.3e-28 130.6 218 42.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.7e-28 130.2 227 41.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.2e-28 129.8 233 44.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.2e-28 129.8 233 43.8
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-28 129.4 218 43.6
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.8e-28 129.4 219 43.4
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.8e-28 129.4 224 45.1
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 3.7e-28 129.0 235 39.6
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.7e-28 129.0 219 39.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.7e-28 129.0 234 37.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.8e-28 128.6 219 43.4
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 4.8e-28 128.6 219 43.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 4.8e-28 128.6 226 42.9
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 6.3e-28 128.3 219 39.3
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.3e-28 128.3 218 43.6
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.3e-28 128.3 218 43.6
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 6.3e-28 128.3 219 43.8
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 8.3e-28 127.9 234 45.7
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.1e-27 127.5 220 44.1
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.4e-27 127.1 218 42.2
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.4e-27 127.1 229 41.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.4e-27 127.1 231 43.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.4e-27 126.3 219 38.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.4e-27 126.3 237 39.7
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.1e-27 125.9 219 42.9
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.1e-27 125.9 233 39.1
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.1e-27 125.9 220 44.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 5.4e-27 125.2 226 43.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 5.4e-27 125.2 228 43.4
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.4e-27 125.2 219 42.5
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.2e-26 124.0 234 37.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 2.7e-26 122.9 227 44.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.9e-26 121.7 233 39.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.7e-26 121.3 205 44.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.0e-25 120.9 230 40.9
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.0e-25 120.9 223 42.6
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.3e-25 120.6 224 42.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.3e-25 119.8 239 42.3
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.3e-25 119.8 229 42.4
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.9e-25 119.4 236 37.7
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 5.0e-25 118.6 238 37.8
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.6e-25 118.2 225 36.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 8.6e-25 117.9 236 36.9
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.5e-24 117.1 225 40.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.5e-24 117.1 238 38.2
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.9e-24 116.7 224 43.3
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 7.2e-24 114.8 167 47.9
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 9.5e-24 114.4 181 45.3
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-23 114.0 225 34.7
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 4.7e-23 112.1 224 35.3
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.0e-22 110.9 224 42.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.0e-22 109.4 233 42.5
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 6.8e-22 108.2 223 35.0
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.2e-21 107.5 196 40.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-21 107.1 183 43.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.6e-21 106.3 219 40.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.4e-21 105.9 81 71.6
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.7e-20 103.6 226 40.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.2e-20 103.2 84 59.5
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.2e-20 103.2 183 42.6
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.8e-19 100.1 83 60.2
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.8e-19 100.1 163 50.9
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.1e-19 99.4 228 36.8
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.1e-19 99.0 179 43.0
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.2e-18 97.4 81 71.6
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.0e-18 96.7 215 35.8
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-17 94.0 179 41.9
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.7e-17 93.6 197 39.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.1e-16 90.9 173 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 3.3e-16 89.4 88 62.5
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 5.8e-13 78.6 175 37.1
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.9e-12 76.3 87 56.3
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.1e-11 74.3 57 63.2
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 7.0e-11 71.6 63 57.1
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.6e-10 70.5 63 55.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.7e-10 69.7 55 56.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 2.7e-10 69.7 57 56.1
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 4.6e-10 68.9 63 54.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 6.0e-10 68.6 56 55.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.8e-10 68.2 57 56.1
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.0e-09 67.8 63 54.0
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.0e-09 67.8 63 52.4
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.3e-09 67.4 63 52.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 6.6e-09 65.1 63 50.8
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 6.6e-09 65.1 56 53.6
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 6.6e-09 65.1 63 50.8
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 6.6e-09 65.1 63 50.8
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 6.6e-09 65.1 61 49.2
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 8.6e-09 64.7 63 50.8
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 8.6e-09 64.7 57 56.1
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-08 64.3 56 51.8
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.5e-08 63.9 79 48.1
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.7e-07 58.9 79 45.6
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 8.0e-07 58.2 81 49.4
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.3e-06 56.6 109 41.3
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 6.8e-06 55.1 92 50.0


User provided reference genes

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