Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 6.3e-146 520.8 266 100.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.1e-134 483.4 266 92.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.6e-133 479.6 267 90.3
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.4e-132 476.5 268 91.4
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.8e-132 476.1 267 90.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.6e-131 472.2 267 90.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 5.7e-131 471.1 267 89.9
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 4.8e-130 468.0 267 88.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 6.3e-130 467.6 267 87.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 6.3e-130 467.6 267 88.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 4.1e-129 464.9 267 88.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 9.1e-129 463.8 267 89.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.6e-128 462.2 266 86.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.5e-128 461.8 267 86.1
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 5.9e-128 461.1 267 88.0
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 7.7e-128 460.7 237 97.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.3e-127 459.9 267 86.5
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.3e-127 459.9 263 87.1
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.9e-127 458.8 267 85.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.9e-127 458.8 267 88.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.5e-127 457.6 259 88.0
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.5e-126 456.4 267 86.5
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.5e-126 456.4 267 86.5
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.9e-126 456.1 267 88.4
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-126 455.3 267 86.9
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.5e-126 454.5 262 88.2
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 5.5e-126 454.5 266 84.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.6e-125 453.0 267 85.0
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.1e-125 452.6 273 84.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.7e-125 452.2 268 85.8
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 6.1e-125 451.1 267 85.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.0e-124 450.3 264 85.6
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.3e-124 449.1 267 85.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.3e-124 449.1 267 86.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 3.0e-124 448.7 267 87.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.0e-124 448.7 266 85.0
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 4.0e-124 448.4 267 84.6
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 6.7e-124 447.6 266 84.2
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 8.8e-124 447.2 265 84.2
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-123 446.8 267 85.4
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-123 446.8 264 84.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.0e-123 446.0 267 85.4
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.6e-123 445.7 267 85.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.7e-123 444.5 268 84.3
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 5.7e-123 444.5 275 85.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 7.5e-123 444.1 267 85.0
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 7.5e-123 444.1 267 83.9
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 7.5e-123 444.1 269 87.4
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.3e-122 443.4 264 84.1
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-122 443.4 265 85.3
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-122 442.6 264 83.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.2e-122 442.6 267 83.1
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.2e-122 442.6 264 84.1
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.8e-122 441.4 268 86.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 4.8e-122 441.4 264 84.5
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 6.3e-122 441.0 269 83.3
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-121 439.5 266 84.2
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.1e-121 438.3 266 83.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 9.1e-121 437.2 267 82.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.6e-120 436.4 315 74.3
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 3.5e-120 435.3 266 83.1
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.5e-120 435.3 266 84.2
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.7e-120 434.1 267 84.3
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.7e-120 434.1 259 83.8
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.2e-119 432.6 267 83.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.2e-119 432.6 267 83.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 8.5e-119 430.6 264 82.2
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.5e-118 429.1 255 87.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.2e-118 428.7 269 79.9
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.2e-118 428.3 262 82.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.5e-118 427.9 261 84.7
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.2e-117 426.8 268 83.6
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.7e-117 425.6 267 80.1
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 8.0e-117 424.1 268 82.1
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 8.0e-117 424.1 261 82.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.5e-115 419.9 267 80.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.5e-115 419.9 267 80.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.5e-115 419.9 264 80.3
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.0e-115 419.5 264 79.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.8e-115 417.2 268 80.2
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.3e-114 416.8 264 79.2
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-114 416.4 294 75.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.7e-114 416.4 257 83.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.2e-114 416.0 264 79.9
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.7e-114 415.2 250 84.0
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.6e-112 409.8 291 75.6
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.7e-112 409.1 251 81.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 3.5e-112 408.7 319 69.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 4.5e-112 408.3 308 71.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 4.5e-112 408.3 265 78.9
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.7e-112 407.5 250 82.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 7.7e-112 407.5 267 79.0
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.8e-111 405.2 254 79.5
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.8e-111 405.2 264 78.4
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 6.5e-111 404.4 267 78.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.5e-111 404.1 261 78.5
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 7.2e-110 401.0 267 79.0
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 9.5e-110 400.6 280 76.4
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.1e-109 399.4 284 77.8
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 3.6e-109 398.7 268 75.7
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-108 396.0 262 79.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.6e-107 392.5 268 75.7
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 9.8e-107 390.6 274 75.2
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-106 390.2 250 80.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 5.4e-105 384.8 268 74.6
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 7.0e-105 384.4 270 74.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.7e-103 379.8 256 77.3
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.1e-102 377.1 267 75.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-102 377.1 257 74.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.1e-102 377.1 257 74.7
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.8e-101 372.5 252 77.4
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.0e-100 370.5 265 74.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.8e-100 369.8 266 72.2
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.9e-100 367.5 265 72.1
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.4e-99 365.5 261 73.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.3e-98 363.6 268 72.4
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.3e-98 363.6 262 73.3
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.7e-98 363.2 262 72.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.2e-98 362.8 262 71.8
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.9e-98 361.7 227 82.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 72.9
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.1e-97 360.5 262 72.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.8e-97 359.8 257 73.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 3.2e-97 359.0 262 72.5
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 3.2e-97 359.0 262 72.5
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.2e-97 359.0 267 73.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 9.2e-97 357.5 262 71.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-96 356.3 262 72.9
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.0e-96 356.3 253 74.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 5.9e-96 354.8 264 71.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.8e-96 354.4 261 72.0
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.0e-95 354.0 262 72.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-95 353.6 262 72.1
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.3e-95 353.6 262 72.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.0e-95 352.4 235 76.6
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 8.6e-95 350.9 257 72.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.3e-94 348.6 262 72.1
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.6e-93 346.7 281 68.7
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.7e-90 336.7 206 85.4
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 7.0e-89 331.3 199 85.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 7.8e-88 327.8 263 67.7
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.3e-87 326.2 264 67.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.0e-87 325.1 266 67.7
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.3e-86 322.4 263 67.3
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.0e-84 315.5 266 66.2
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.5e-83 313.5 198 82.3
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 8.3e-82 307.8 263 65.4
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.4e-81 306.2 262 64.5
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.5e-80 302.4 241 70.1
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.1e-76 289.3 191 79.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.6e-71 271.2 174 79.9
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-69 266.5 144 91.7
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 7.6e-43 178.3 121 76.9
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 9.3e-41 171.4 212 51.4
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.5e-40 169.5 117 75.2
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.6e-37 160.6 243 42.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.8e-37 159.8 183 49.7
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 6.9e-36 155.2 194 45.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.9e-30 137.1 93 73.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.3e-30 136.3 74 93.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.2e-26 123.6 89 70.8
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-25 119.0 267 34.5
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 5.0e-18 95.9 183 36.6
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 6.5e-18 95.5 92 55.4
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 3.6e-16 89.7 117 42.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.7e-14 82.4 129 46.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.2e-10 70.5 40 85.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 6.5e-10 68.9 41 78.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.5e-09 65.9 41 75.6
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.7e-08 63.5 43 69.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.0e-07 61.6 137 35.0
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.0e-07 60.1 86 36.0
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 2.6e-06 57.0 32 90.6
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 9.7e-06 55.1 63 49.2


User provided reference genes

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