Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 6.5e-22 106.7 61 100.0
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 7.2e-13 76.6 61 75.4
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 7.2e-13 76.6 61 75.4
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 7.2e-13 76.6 61 77.0
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 9.4e-13 76.3 61 77.0
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 1.6e-12 75.5 61 75.4
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 6.1e-12 73.6 61 70.5
PSO339G3914 Papaver somniferum HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 68.9
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 73.8
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 2.3e-11 71.6 61 73.8
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 2.3e-11 71.6 59 71.2
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 68.9
PSO339G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 68.9
Haze_19429 Corylus avellana HOM05D004778 ORTHO05D005679 3.9e-11 70.9 57 80.7
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 3.9e-11 70.9 59 72.9
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 6.7e-11 70.1 61 72.1
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 1.1e-10 69.3 61 68.9
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 2.6e-10 68.2 61 67.2
COL.COLO4_36083 Corchorus olitorius HOM05D004778 ORTHO05D005679 3.3e-10 67.8 62 69.4
Gohir.A13G099600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 4.4e-10 67.4 61 67.2
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 4.4e-10 67.4 61 68.9
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 5.7e-10 67.0 61 63.9
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 5.7e-10 67.0 61 65.6
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 7.4e-10 66.6 61 65.6
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 7.4e-10 66.6 62 71.0
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 7.4e-10 66.6 61 62.3
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 9.7e-10 66.2 61 60.7
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 9.7e-10 66.2 61 62.3
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 9.7e-10 66.2 61 67.2
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 1.3e-09 65.9 61 63.9
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 1.3e-09 65.9 61 59.0
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 1.7e-09 65.5 61 67.2
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 1.7e-09 65.5 61 67.2
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 2.8e-09 64.7 61 65.6
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 59.0
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 59.0
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 59.0
CANSAT78G1478 Cannabis sativa HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 65.6
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 63.9
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 65.6
PSO339G1550 Papaver somniferum HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 62.3
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 4.8e-09 63.9 61 59.0
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 6.3e-09 63.5 61 62.3
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 8.2e-09 63.2 61 59.0
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 8.2e-09 63.2 62 67.7
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 60.7
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 65.6
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 60.7
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 62.3
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 60.7
PSO339G2985 Papaver somniferum HOM05D004778 ORTHO05D005679 1.4e-08 62.4 58 69.0
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 1.8e-08 62.0 61 63.9
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 63.9
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 60.7
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 62.3
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 62.3
Gohir.D13G103100 Gossypium hirsutum HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 62.3
PSO384G3806 Papaver somniferum HOM05D004778 ORTHO05D005679 2.4e-08 61.6 58 67.2
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 3.1e-08 61.2 61 57.4
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 3.1e-08 61.2 61 62.3
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 3.1e-08 61.2 62 69.4
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 3.1e-08 61.2 62 69.4
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 4.1e-08 60.8 61 54.1
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 4.1e-08 60.8 61 60.7
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 5.3e-08 60.5 61 57.4
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-08 60.5 61 57.4
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-08 60.5 61 57.4
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 5.3e-08 60.5 61 57.4
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-08 60.5 61 57.4
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 6.9e-08 60.1 61 60.7
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 6.9e-08 60.1 61 59.0
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 9.1e-08 59.7 61 60.7
Medtr7g085780 Medicago truncatula HOM05D004778 ORTHO05D005679 9.1e-08 59.7 62 69.4
PGSC0003DMG400008381 Solanum tuberosum HOM05D004778 ORTHO05D005679 1.5e-07 58.9 62 62.9
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 60.7
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 60.7
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 60.7
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 55.7
BcaB05g23546 Brassica carinata HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 58.1
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 3.4e-07 57.8 58 63.8
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 3.4e-07 57.8 61 57.4
Aqoxy2G00513 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 4.5e-07 57.4 59 59.3
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 4.5e-07 57.4 62 56.5
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 4.5e-07 57.4 62 56.5
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 4.5e-07 57.4 62 56.5
Glyma.16G153600 Glycine max HOM05D004778 ORTHO05D005679 4.5e-07 57.4 62 64.5
Nitab4.5_0000394g0080 Nicotiana tabacum HOM05D004778 ORTHO05D005679 4.5e-07 57.4 57 63.2
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 56.5
Lalb_Chr22g0359101 Lupinus albus HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 59.7
Medtr6g029260 Medicago truncatula HOM05D004778 ORTHO05D005679 1.0e-06 56.2 64 64.1
BcaB04g20986 Brassica carinata HOM05D004778 ORTHO05D005679 1.3e-06 55.8 63 58.7
C01p51570 Brassica napus HOM05D004778 ORTHO05D005679 1.3e-06 55.8 63 58.7
BolC1t05100H Brassica oleracea HOM05D004778 ORTHO05D005679 1.3e-06 55.8 63 58.7
Glyma.02G072400 Glycine max HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 64.5
Gorai.007G262400 Gossypium raimondii HOM05D004778 ORTHO05D005679 1.7e-06 55.5 61 63.9
VMungo0464G1949 Vigna mungo HOM05D004778 ORTHO05D005679 1.7e-06 55.5 62 61.3
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 2.2e-06 55.1 54 57.4
Phvul.004G080600 Phaseolus vulgaris HOM05D004778 ORTHO05D005679 2.2e-06 55.1 62 61.3
THA.LOC109116609 Tarenaya hassleriana HOM05D004778 ORTHO05D005679 2.2e-06 55.1 62 58.1
Migut.K00009 Erythranthe guttata HOM05D004778 ORTHO05D005679 2.9e-06 54.7 59 55.9
BraA01t04050Z Brassica rapa HOM05D004778 ORTHO05D005679 3.8e-06 54.3 63 57.1
Gohir.A11G235600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 5.0e-06 53.9 61 62.3
PGSC0003DMG400032211 Solanum tuberosum HOM05D004778 ORTHO05D005679 5.0e-06 53.9 63 55.6
BolC6t36104H Brassica oleracea HOM05D004778 ORTHO05D005679 6.5e-06 53.5 62 59.7
Ca_08272_v3 Cicer arietinum L. HOM05D004778 ORTHO05D005679 6.5e-06 53.5 62 59.7
Gohir.A11G235500 Gossypium hirsutum HOM05D004778 ORTHO05D005679 6.5e-06 53.5 61 62.3
Gohir.D11G246500 Gossypium hirsutum HOM05D004778 ORTHO05D005679 6.5e-06 53.5 61 62.3
Nitab4.5_0000626g0010 Nicotiana tabacum HOM05D004778 ORTHO05D005679 6.5e-06 53.5 55 60.0
Solyc10g078580.1 Solanum lycopersicum HOM05D004778 ORTHO05D005679 6.5e-06 53.5 62 61.3
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 8.5e-06 53.1 62 59.7
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 8.5e-06 53.1 62 59.7


User provided reference genes

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