Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 3338.1 1685 100.0
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 3183.3 1686 95.9
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 2236.8 1707 70.2
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 2207.2 1705 70.0
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1784.2 1694 58.0
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1692.6 1785 53.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1657.9 1697 54.9
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1628.2 1707 54.2
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1593.6 1712 53.3
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1591.6 1577 57.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1576.2 1703 53.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1572.0 1703 52.8
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1564.7 1687 54.0
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1563.9 1692 53.3
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1563.1 1712 52.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1556.6 1712 52.3
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1552.3 1725 52.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1550.4 1703 52.4
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1545.0 1717 52.6
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1525.8 1693 52.2
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1521.5 1693 51.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1518.8 1688 52.1
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1504.6 1704 51.5
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1486.1 1716 50.9
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1470.3 1724 50.5
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1458.4 1690 49.6
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1449.9 1698 51.0
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1424.1 1405 56.2
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1389.4 1724 49.1
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1386.3 1744 47.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1386.3 1744 47.5
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1376.3 1701 48.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1369.4 1695 47.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1350.5 1622 48.5
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 0.0e+00 1338.9 1682 49.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1326.6 1692 47.2
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 1315.1 1698 46.4
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 1314.3 1727 47.1
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1288.1 1706 45.6
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 0.0e+00 1264.6 1708 46.1
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 0.0e+00 1256.9 1717 45.8
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1242.6 1700 45.4
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1222.2 1245 53.4
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1221.8 1246 53.1
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 0.0e+00 1195.6 1690 44.1
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 0.0e+00 1193.7 1702 45.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 0.0e+00 1187.2 1609 46.0
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 0.0e+00 1184.1 1711 43.1
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1177.9 1423 49.8
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 1175.2 1374 48.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 0.0e+00 1139.8 2037 37.9
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 1109.7 1724 41.5
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 1096.6 1724 41.3
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 0.0e+00 1094.3 1640 43.5
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 0.0e+00 1080.5 1695 41.3
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 1076.2 1648 41.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.9e-309 1066.6 1675 42.3
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 4.0e-307 1058.9 1722 39.4
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.6e-306 1056.2 1794 40.6
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 8.4e-305 1051.2 1377 45.7
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 5.5e-304 1048.5 1710 40.8
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.9e-301 1040.0 1715 40.8
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.5e-297 1025.0 1253 47.3
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.8e-291 1006.9 1845 38.4
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 7.2e-288 995.0 1726 39.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 9.4e-288 994.6 1725 40.1
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 5.5e-280 968.8 1668 40.3
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.3e-276 955.3 1672 39.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 8.2e-276 954.9 1736 38.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 5.3e-275 952.2 1651 40.3
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.3e-273 947.6 1653 39.0
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.9e-272 943.7 1694 39.6
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 4.2e-272 942.6 1654 40.0
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.1e-271 940.3 944 52.8
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 2.7e-271 939.9 1668 39.4
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 8.0e-271 938.3 1661 39.1
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.4e-270 937.6 1653 39.1
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.8e-270 937.2 1731 38.1
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 6.8e-270 935.3 1657 38.9
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-267 927.5 1703 38.4
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.8e-267 927.2 807 58.9
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 2.0e-266 923.7 1658 38.8
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.5e-256 891.0 1281 43.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 4.4e-245 852.8 1661 35.3
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.3e-241 840.5 767 55.8
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.1e-240 838.2 1804 36.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.4e-238 831.2 1056 48.6
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 4.9e-228 796.2 638 64.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.6e-226 791.2 1730 35.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.1e-226 790.8 1698 34.9
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.9e-221 771.9 668 58.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.7e-220 771.2 663 61.1
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 8.7e-201 705.7 1781 32.2
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.1e-190 672.2 1332 38.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 3.7e-183 647.1 1282 34.9
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 4.1e-182 643.7 1434 33.6
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.3e-145 521.5 431 60.3
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 5.7e-136 490.3 918 32.4
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.6e-124 450.3 825 40.5
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 8.6e-124 449.9 1133 34.3
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 8.1e-114 416.8 968 33.4
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 6.4e-111 407.1 613 43.4
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.1e-102 379.8 692 35.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 7.9e-93 347.1 615 41.8
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 3.1e-89 335.1 902 29.2
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 5.3e-81 307.8 454 37.7
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 2.1e-74 285.8 667 31.6
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.8e-74 285.4 535 32.0
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.8e-73 282.7 843 26.7
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.3e-71 276.6 824 31.3
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.2e-69 270.0 854 28.5
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 1.8e-57 229.6 380 42.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 5.3e-57 228.0 1173 26.0
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.4e-54 219.9 385 40.5
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 5.5e-54 218.0 339 44.8
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 1.0e-44 187.2 149 58.4
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 9.1e-41 174.1 337 39.8
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-37 163.7 130 58.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.9e-32 144.8 421 33.5
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 2.3e-28 132.9 179 49.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.5e-24 118.6 679 27.4
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.9e-22 113.2 359 33.1
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 7.3e-14 84.7 103 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 6.2e-13 81.6 306 27.1
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 8.0e-13 81.3 112 43.8
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 8.9e-12 77.8 140 36.4
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 4.4e-11 75.5 57 68.4


User provided reference genes

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