Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 2275.7 1188 100.0
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 2040.4 1199 90.7
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1745.3 1190 79.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1706.4 1224 74.6
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1698.3 1226 74.6
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1682.5 1250 73.4
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1680.6 1250 72.3
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1647.1 1217 72.6
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1641.3 1218 72.9
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1640.2 1224 72.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1638.2 1216 72.2
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1638.2 1217 72.3
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1638.2 1224 72.2
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1632.1 1221 73.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1631.3 1218 73.2
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1630.9 1218 72.5
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1630.5 1216 71.7
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1627.8 1213 73.0
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1625.9 1224 71.4
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1621.3 1225 73.2
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1620.1 1216 72.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1619.8 1204 71.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1616.3 1233 70.6
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1616.3 1230 72.0
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1610.9 1226 71.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1610.1 1225 72.0
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1604.7 1211 71.3
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1602.0 1213 71.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1599.3 1203 72.1
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1598.9 1233 70.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1597.0 1233 70.1
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1596.6 1216 71.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1596.3 1224 70.8
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1594.3 1233 70.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1593.6 1220 70.1
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1590.9 1217 71.4
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1580.5 1229 70.2
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1580.1 1220 69.8
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1578.5 1196 71.4
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1571.6 1216 69.6
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1565.8 1222 69.1
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1563.9 1212 70.4
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1562.7 1225 70.3
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1562.7 1225 70.3
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1558.5 1220 70.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1553.5 1218 69.9
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1549.6 1187 70.5
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1547.3 1151 71.4
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1541.2 1227 68.9
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1538.9 1202 70.2
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1528.8 1227 69.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1527.3 1211 68.3
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1524.2 1207 68.8
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1519.2 1421 61.0
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1515.0 1229 67.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1228 67.4
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1507.3 1220 66.5
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1504.6 1212 68.0
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1503.4 1202 68.7
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1500.3 1203 68.7
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1500.3 1203 68.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1492.2 1202 68.5
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1491.1 1204 68.8
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1489.6 1188 69.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1483.4 1203 68.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1480.7 1227 67.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1473.8 1232 67.1
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1471.4 1214 66.4
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1471.1 1246 66.3
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1470.7 1246 66.3
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1470.7 1246 66.3
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1459.1 1215 65.8
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1458.0 1219 65.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1455.7 1202 68.0
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1451.4 1141 68.6
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1449.1 1205 65.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1447.6 1211 64.2
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1442.6 1213 65.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1230 64.5
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1432.9 1353 61.0
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1207 66.4
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1188 65.5
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1144 68.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1414.8 1191 66.6
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1408.7 1155 67.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1402.9 1202 66.1
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1402.9 1156 66.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1393.3 1192 66.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1393.3 1255 61.9
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1361.7 1248 62.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1233 63.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1317.8 809 85.3
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1295.4 1033 66.8
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1248.4 1191 58.9
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1232.2 1068 62.7
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1221.8 1226 59.0
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1210.7 1181 60.1
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1201.0 1058 62.9
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1193.7 1178 58.6
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1161.0 1113 58.0
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1156.7 977 64.7
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1108.6 1196 55.1
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 9.8e-311 1070.5 681 81.4
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 8.0e-310 1067.4 1149 53.7
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.2e-292 1010.4 772 71.2
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.5e-292 1010.0 1251 50.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 3.7e-291 1005.4 1133 51.6
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 2.4e-282 976.1 746 69.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.5e-258 896.3 945 54.0
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-255 887.5 674 70.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.4e-240 837.4 1250 43.0
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.9e-232 809.3 634 67.4
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 2.4e-229 800.0 707 65.6
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 5.9e-220 768.8 1288 40.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.7e-219 767.3 662 62.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.8e-213 747.3 673 63.0
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 2.5e-210 736.9 583 69.3
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 4.4e-207 726.1 613 63.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.3e-206 722.2 1157 41.6
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 8.3e-190 668.7 565 63.7
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.0e-184 649.8 1132 39.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.4e-173 614.8 518 63.7
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.6e-171 605.9 466 68.9
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.6e-171 605.9 459 69.3
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 3.6e-161 573.5 402 78.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 2.4e-160 570.9 429 70.2
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 7.1e-141 506.1 393 71.5
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 4.5e-135 486.9 1526 28.8
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 8.0e-108 396.4 373 61.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.4e-104 384.8 302 68.2
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.9e-102 377.9 232 86.2
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-101 375.9 422 52.4
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 7.2e-101 373.2 484 50.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.2e-99 367.1 1134 30.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-87 329.3 396 50.8
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 2.0e-79 302.0 389 46.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 6.8e-75 287.0 263 58.6
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.5e-74 285.8 239 65.3
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.1e-63 248.8 202 66.8
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.8e-58 230.7 131 90.8
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-55 220.7 210 57.6
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-54 217.6 208 57.7
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.6e-54 216.9 224 54.9
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.3e-53 214.9 204 57.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 7.3e-53 213.8 181 62.4
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-47 194.9 283 45.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 8.7e-46 190.3 181 58.6
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-43 181.0 134 65.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-42 177.9 130 66.9
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 9.9e-42 176.8 166 63.3
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 6.4e-41 174.1 130 66.2
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.9e-40 172.6 127 66.1
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-40 172.2 133 72.2
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-31 143.3 111 62.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.1e-31 142.5 106 64.2
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-27 130.2 112 59.8
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.7e-25 122.9 105 71.4
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.7e-25 122.9 105 71.4
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.3e-22 113.2 79 81.0
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 5.1e-22 111.3 179 43.0
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-21 109.0 224 36.6
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.6e-20 106.3 64 82.8
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.0e-19 100.5 69 71.0
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.7e-17 96.3 131 46.6
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 5.1e-14 84.7 107 56.1
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.7e-14 84.3 253 28.1
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.2e-12 79.3 115 48.7
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 2.0e-10 72.8 132 47.0
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 1.7e-09 69.7 122 35.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 5.0e-09 68.2 60 60.0
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 8.5e-09 67.4 63 61.9
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 2.5e-08 65.9 63 60.3
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 3.2e-08 65.5 63 60.3
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 3.2e-08 65.5 63 60.3
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 3.2e-08 65.5 63 60.3
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 4.2e-08 65.1 72 48.6


User provided reference genes

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