Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 1.4e-119 433.0 211 100.0
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 8.9e-111 403.7 209 95.2
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.8e-50 203.4 204 56.4
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 6.9e-47 191.4 118 83.1
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 1.3e-45 187.2 115 81.7
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 6.5e-45 184.9 113 80.5
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 1.4e-44 183.7 115 78.3
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 7.1e-44 181.4 115 80.9
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 7.1e-44 181.4 115 80.9
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 2.1e-43 179.9 115 80.0
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 2.7e-43 179.5 114 82.5
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 6.1e-43 178.3 115 78.3
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 1.1e-41 174.1 115 74.8
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 1.1e-41 174.1 115 74.8
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 1.5e-41 173.7 115 74.8
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 1.9e-41 173.3 115 77.4
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 2.5e-41 172.9 121 76.0
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 5.7e-41 171.8 122 74.6
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 1.3e-40 170.6 115 73.9
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 1.3e-40 170.6 124 73.4
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 4.1e-39 165.6 129 69.0
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 1.5e-38 163.7 115 73.0
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 2.6e-38 162.9 114 73.7
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 3.4e-38 162.5 113 71.7
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 7.7e-38 161.4 118 70.3
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 1.0e-37 161.0 114 72.8
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 1.0e-37 161.0 113 74.3
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 1.0e-37 161.0 113 73.5
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.7e-37 160.2 113 72.6
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 1.7e-37 160.2 113 71.7
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 5.0e-37 158.7 113 70.8
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.1e-36 157.5 113 69.9
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.1e-36 157.5 113 69.9
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 1.4e-36 157.1 113 70.8
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 1.4e-36 157.1 115 72.2
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 1.9e-36 156.8 119 71.4
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 1.9e-36 156.8 115 74.8
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 2.5e-36 156.4 119 70.6
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 3.2e-36 156.0 125 68.8
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 4.2e-36 155.6 119 68.9
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 7.2e-36 154.8 113 69.0
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 9.4e-36 154.5 113 69.0
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 1.6e-35 153.7 114 69.3
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 2.1e-35 153.3 125 68.0
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 2.7e-35 152.9 113 69.0
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 4.6e-35 152.1 113 69.0
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 4.6e-35 152.1 114 68.4
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 4.6e-35 152.1 114 70.2
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 6.1e-35 151.8 113 68.1
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 7.9e-35 151.4 117 70.9
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 1.8e-34 150.2 113 68.1
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 1.8e-34 150.2 114 68.4
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 3.9e-34 149.1 113 67.3
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 3.9e-34 149.1 113 67.3
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 3.9e-34 149.1 113 67.3
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 6.7e-34 148.3 114 67.5
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 8.8e-34 147.9 125 66.4
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 8.8e-34 147.9 113 66.4
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 1.5e-33 147.1 113 66.4
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 1.5e-33 147.1 113 66.4
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 1.5e-33 147.1 113 67.3
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 2.0e-33 146.7 114 67.5
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 2.5e-33 146.4 115 63.5
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 4.3e-33 145.6 113 69.0
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 1.3e-32 144.1 94 74.5
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 1.3e-32 144.1 125 60.8
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 6.3e-32 141.7 113 64.6
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 1.4e-31 140.6 116 67.2
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 1.4e-31 140.6 103 71.8
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 4.1e-31 139.0 116 63.8
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 1.2e-30 137.5 114 64.9
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.5e-30 137.1 115 66.1
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 2.0e-30 136.7 114 64.9
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.6e-30 136.3 115 65.2
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 4.5e-30 135.6 127 58.3
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 1.0e-29 134.4 120 60.0
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 1.3e-29 134.0 111 64.0
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 1.3e-29 134.0 115 63.5
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 2.2e-29 133.3 115 61.7
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 3.8e-29 132.5 106 64.2
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 3.8e-29 132.5 127 60.6
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 6.5e-29 131.7 113 65.5
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 8.5e-29 131.3 114 64.9
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.5e-29 131.3 114 64.9
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.5e-29 131.3 114 64.9
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.5e-29 131.3 114 64.9
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.5e-29 131.3 114 64.9
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 8.5e-29 131.3 115 64.3
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 1.4e-28 130.6 91 75.8
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 3.2e-28 129.4 130 57.7
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 3.2e-28 129.4 124 61.3
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 2.1e-27 126.7 124 55.6
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 6.1e-27 125.2 115 60.0
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 1.0e-26 124.4 107 61.7
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 2.3e-26 123.2 119 59.7
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 2.3e-26 123.2 111 60.4
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 3.0e-26 122.9 119 58.8
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 2.0e-25 120.2 114 57.9
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 5.7e-25 118.6 125 56.8
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 3.7e-24 115.9 120 55.8
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 2.6e-22 109.8 120 53.3
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 3.5e-22 109.4 70 74.3
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 8.0e-19 98.2 96 53.1
HPP92_006606 Vanilla planifolia HOM05D005509 ORTHO05D006411 5.2e-18 95.5 113 47.8
C04p27060 Brassica napus HOM05D005509 ORTHO05D006411 1.1e-17 94.4 92 54.3
BolC4t24086H Brassica oleracea HOM05D005509 ORTHO05D006411 1.1e-17 94.4 92 54.3
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 2.0e-17 93.6 114 48.2
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.3e-16 90.9 77 64.9
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 2.4e-15 86.7 77 61.0
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 3.1e-15 86.3 80 65.0
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 5.3e-15 85.5 57 73.7
Solyc05g054560.3 Solanum lycopersicum HOM05D005509 ORTHO05D006411 5.3e-15 85.5 123 47.2
Sopen05g033040 Solanum pennellii HOM05D005509 ORTHO05D006411 5.3e-15 85.5 123 47.2
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 9.1e-15 84.7 55 70.9
Rhsim08G0179200 Rhododendron simsii HOM05D005509 ORTHO05D006411 9.1e-15 84.7 81 63.0
Rhsim09G0001400 Rhododendron simsii HOM05D001561 ORTHO05D001715 1.2e-14 84.3 81 59.3
Rhsim08G0176800 Rhododendron simsii HOM05D005509 ORTHO05D006411 2.6e-14 83.2 81 61.7
Actinidia29219 Actinidia chinensis HOM05D005509 ORTHO05D006411 1.3e-13 80.9 119 47.1
Pp3c12_23720 Physcomitrium patens HOM05D005509 ORTHO05D006411 3.8e-13 79.3 97 46.4
BcaC02g10727 Brassica carinata HOM05D005509 ORTHO05D006411 8.5e-13 78.2 123 40.7
CDE09G0335 Ceratophyllum demersum HOM05D002573 ORTHO05D002918 1.1e-12 77.8 59 62.7
BcaB06g27450 Brassica carinata HOM05D005509 ORTHO05D006411 3.2e-12 76.3 54 66.7
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 4.2e-12 75.9 74 56.8
BcaB04g18041 Brassica carinata HOM05D005509 ORTHO05D006411 7.2e-12 75.1 51 70.6
PGSC0003DMG400023526 Solanum tuberosum HOM05D005509 ORTHO05D006411 2.1e-11 73.6 49 69.4
Pp3c10_18090 Physcomitrium patens HOM05D005509 ORTHO05D006411 3.6e-11 72.8 110 35.5
BcaNung05648 Brassica carinata HOM05D005509 ORTHO05D006411 4.7e-11 72.4 54 63.0
Os12g0568700 Oryza sativa ssp. japonica HOM05D005509 ORTHO05D006411 8.0e-11 71.6 82 47.6
Pp3c3_30480 Physcomitrium patens HOM05D005509 ORTHO05D006411 1.8e-10 70.5 95 41.1
Hma1.2p1_2608F.1_g325330 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 1.5e-09 67.4 54 72.2
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 3.7e-08 62.8 51 52.9


User provided reference genes

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