Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.1e-117 426.8 235 100.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.5e-103 379.8 235 82.6
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.4e-101 372.5 234 81.6
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.4e-101 372.5 235 82.1
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 6.6e-99 364.4 236 84.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 6.6e-99 364.4 218 83.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.3e-98 362.1 236 79.2
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.3e-98 361.7 238 82.4
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 9.6e-98 360.5 240 81.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.8e-97 359.0 236 79.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.6e-97 358.6 236 81.4
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.8e-97 358.2 220 83.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.8e-97 358.2 220 85.0
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 6.2e-97 357.8 220 80.9
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 8.1e-97 357.5 213 82.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 8.1e-97 357.5 221 81.9
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.1e-96 355.5 236 75.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.5e-95 353.2 219 86.3
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.5e-95 353.2 223 79.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.4e-95 352.1 220 81.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.8e-95 351.3 210 82.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.2e-94 349.4 219 79.9
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-94 349.0 218 78.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.4e-94 347.8 219 80.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-93 347.1 235 75.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.4e-93 346.7 235 73.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.9e-93 346.3 237 78.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.2e-93 345.5 218 77.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.2e-93 345.5 218 77.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 5.4e-93 344.7 219 79.9
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.1e-93 344.4 215 82.3
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.1e-93 344.4 215 82.3
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.2e-92 343.6 218 79.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.6e-92 343.2 222 80.2
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.6e-92 343.2 215 81.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.1e-92 342.8 215 81.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-92 342.8 215 81.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.1e-92 342.8 212 79.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.5e-92 342.0 220 78.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.6e-92 341.7 219 80.4
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 7.9e-92 340.9 220 79.1
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-91 340.5 215 81.4
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.7e-91 339.7 221 76.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-91 339.3 215 81.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-91 339.3 215 81.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.9e-91 338.6 221 76.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 5.1e-91 338.2 222 77.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.1e-91 338.2 235 73.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-90 336.7 219 77.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.9e-90 336.3 218 76.6
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.3e-90 335.5 221 75.6
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.3e-90 335.1 235 74.0
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 9.6e-90 334.0 238 77.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 3.6e-89 332.0 219 76.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 6.2e-89 331.3 235 74.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.8e-88 329.7 218 76.6
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.0e-88 327.4 221 76.0
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.2e-87 327.0 221 76.5
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.0e-87 326.2 215 77.7
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.0e-87 326.2 215 77.7
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.6e-87 325.9 245 74.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.6e-87 325.9 210 81.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.4e-87 325.5 236 75.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.9e-87 323.9 239 74.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.3e-86 323.6 222 72.1
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.9e-86 322.4 221 72.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.9e-85 319.7 213 74.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.4e-85 319.3 242 71.1
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 9.3e-85 317.4 214 73.8
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.2e-84 317.0 219 76.3
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.6e-84 316.6 218 72.0
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.5e-84 315.5 210 74.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 3.5e-84 315.5 212 76.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.0e-83 313.9 234 70.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 6.7e-83 311.2 218 75.2
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 6.7e-83 311.2 208 73.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 6.7e-83 311.2 212 72.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.1e-82 310.5 208 73.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.9e-82 309.7 238 66.4
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 5.6e-82 308.1 212 74.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.6e-81 306.6 205 71.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.8e-81 305.8 212 69.8
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 6.2e-81 304.7 239 64.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.2e-81 304.7 216 70.4
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.4e-79 298.9 201 76.6
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.9e-78 295.0 215 69.3
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-77 293.5 214 72.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.2e-77 292.0 226 69.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.5e-77 291.6 205 70.7
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 5.5e-77 291.6 214 72.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 9.3e-77 290.8 222 67.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.6e-76 290.0 217 67.3
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.7e-75 284.3 219 65.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.6e-74 280.8 208 67.3
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.6e-73 280.0 216 67.1
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.8e-73 279.3 210 68.1
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.7e-73 278.9 211 66.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 3.7e-73 278.9 216 66.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.8e-72 276.6 219 64.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.5e-71 273.5 216 65.7
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.5e-71 273.5 219 64.4
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.4e-71 272.3 219 64.8
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 7.6e-71 271.2 216 65.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.6e-71 271.2 220 65.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.6e-71 271.2 220 65.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.6e-71 271.2 220 65.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-70 270.4 220 65.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.7e-70 270.0 220 64.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-70 270.0 220 65.0
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.7e-70 270.0 220 64.5
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-70 269.2 220 65.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.8e-70 268.9 220 64.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.8e-70 268.9 216 65.3
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 5.0e-70 268.5 220 64.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.0e-70 268.5 208 66.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.0e-70 268.5 218 62.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 8.4e-70 267.7 221 64.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 8.4e-70 267.7 220 64.1
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.7e-68 262.7 220 65.0
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.3e-67 259.6 205 62.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.0e-67 259.2 218 66.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 212 60.8
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.5e-66 256.1 205 64.9
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.6e-65 253.4 204 61.8
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 8.2e-65 251.1 142 83.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.0e-62 241.9 213 60.1
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.8e-57 225.3 220 53.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 8.2e-57 224.6 176 65.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 5.3e-56 221.9 187 63.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.1e-52 209.9 174 61.5
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.0e-50 203.4 213 54.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 5.7e-50 201.8 120 81.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.6e-47 193.0 214 52.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 7.7e-47 191.4 120 72.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 6.5e-46 188.3 136 73.5
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.6e-42 176.4 108 73.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 7.5e-42 174.9 101 79.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 7.5e-42 174.9 104 79.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 2.3e-19 100.1 62 75.8
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.0e-19 99.8 93 57.0


User provided reference genes

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