Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 7.4e-45 183.3 83 100.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-39 164.9 83 89.2
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 4.6e-39 164.1 84 89.3
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.1e-35 151.4 79 86.1
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.8e-22 109.0 81 58.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.5e-16 87.4 80 50.0
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 8.0e-15 83.6 83 55.4
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.0e-14 83.2 80 53.8
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.0e-14 83.2 80 53.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.4e-14 82.8 80 53.8
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.4e-14 82.8 82 48.8
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.8e-14 82.4 83 51.8
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.8e-14 82.4 83 51.8
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.8e-14 82.4 80 48.8
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 2.3e-14 82.0 80 52.5
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 3.0e-14 81.6 83 59.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.0e-14 81.3 68 58.8
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 8.8e-14 80.1 80 47.5
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.2e-13 79.7 82 47.6
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.2e-13 79.7 76 53.9
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.5e-13 79.3 77 53.2
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-13 79.0 81 49.4
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 3.4e-13 78.2 80 51.2
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.4e-13 78.2 82 47.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.4e-13 78.2 80 51.2
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 4.4e-13 77.8 81 46.9
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 7.5e-13 77.0 80 51.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.5e-13 77.0 81 48.1
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 9.8e-13 76.6 69 53.6
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 9.8e-13 76.6 69 55.1
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.3e-12 76.3 82 46.3
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.3e-12 76.3 74 50.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.7e-12 75.9 77 51.9
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.7e-12 75.9 68 48.5
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.8e-12 75.1 59 59.3
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.8e-12 75.1 59 59.3
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 2.8e-12 75.1 80 47.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.8e-12 75.1 68 52.9
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.7e-12 74.7 71 50.7
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.7e-12 74.7 71 50.7
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.7e-12 74.7 82 41.5
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 4.8e-12 74.3 81 45.7
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.8e-12 74.3 81 46.9
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 6.3e-12 73.9 81 44.4
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 6.3e-12 73.9 81 44.4
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.3e-12 73.9 81 49.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.3e-12 73.6 69 53.6
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.1e-11 73.2 81 45.7
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.8e-11 72.4 83 47.0
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.8e-11 72.4 80 45.0
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.4e-11 72.0 82 43.9
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.4e-11 72.0 69 49.3
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 3.1e-11 71.6 80 45.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 3.1e-11 71.6 72 43.1
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.1e-11 71.6 79 51.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 4.1e-11 71.2 76 46.1
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 5.4e-11 70.9 80 45.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 5.4e-11 70.9 69 46.4
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 9.1e-11 70.1 80 45.0
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 9.1e-11 70.1 43 62.8
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 9.1e-11 70.1 43 62.8
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.2e-10 69.7 79 43.0
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-10 69.3 41 65.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 2.0e-10 68.9 80 47.5
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.0e-10 68.9 42 66.7
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.7e-10 68.6 43 60.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.7e-10 68.6 43 60.5
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.7e-10 68.6 43 60.5
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 4.5e-10 67.8 43 60.5
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.5e-10 67.8 68 45.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.9e-10 67.4 71 45.1
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.9e-10 67.4 50 56.0
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 7.7e-10 67.0 78 48.7
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 7.7e-10 67.0 76 50.0
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.0e-09 66.6 73 52.1
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.0e-09 66.6 82 46.3
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.3e-09 66.2 81 42.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-09 66.2 52 57.7
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 68 47.1
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 73 50.7
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 78 46.2
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 74 41.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.2e-09 65.5 73 46.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.2e-09 65.5 70 47.1
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 2.2e-09 65.5 52 51.9
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-09 65.1 74 50.0
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.5e-09 63.9 42 66.7
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.5e-09 63.9 43 62.8
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.1e-08 63.2 60 48.3
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.1e-08 63.2 82 40.2
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-08 63.2 41 58.5
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.1e-08 63.2 49 61.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.5e-08 62.8 40 55.0
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.5e-08 62.8 45 64.4
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 2.5e-08 62.0 45 53.3
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 3.2e-08 61.6 77 42.9
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 7.2e-08 60.5 73 41.1
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 9.4e-08 60.1 83 42.2
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.2e-07 59.7 72 41.7
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.2e-07 59.7 64 46.9
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 1.6e-07 59.3 77 36.4
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.6e-07 59.3 46 52.2
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.6e-07 58.2 75 44.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 4.7e-07 57.8 40 50.0
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 1.0e-06 56.6 78 43.6
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-06 55.8 72 45.8
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.8e-06 55.8 78 43.6
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.0e-06 54.7 40 47.5
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 4.0e-06 54.7 82 37.8
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 6.8e-06 53.9 47 53.2


User provided reference genes

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