Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 9.0e-156 553.5 274 100.0
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 2.1e-144 515.8 310 85.5
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 1.7e-106 389.8 284 71.1
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 5.7e-102 374.8 280 66.8
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 1.7e-101 373.2 269 70.6
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 1.7e-101 373.2 261 70.5
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 5.9e-99 364.8 283 65.7
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 1.7e-98 363.2 264 68.6
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 1.7e-98 363.2 274 67.9
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.3e-98 362.8 269 67.7
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 5.0e-98 361.7 285 64.9
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 5.0e-98 361.7 283 65.7
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 5.0e-98 361.7 283 64.7
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.1e-97 360.5 283 65.4
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 2.5e-97 359.4 285 65.3
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 2.5e-97 359.4 283 65.4
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 4.2e-97 358.6 302 62.6
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 7.2e-97 357.8 275 66.5
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 9.5e-97 357.5 283 63.6
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 9.5e-97 357.5 282 65.2
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 3.6e-96 355.5 285 63.9
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 8.0e-96 354.4 282 64.2
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.4e-95 353.6 252 69.8
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 1.8e-95 353.2 282 64.2
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 4.0e-95 352.1 269 67.3
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 1.2e-94 350.5 270 67.0
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 1.2e-94 350.5 283 64.3
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 1.5e-94 350.1 270 66.3
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 2.0e-94 349.7 265 66.0
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 2.0e-94 349.7 263 68.1
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.4e-94 349.0 275 64.4
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 3.4e-94 349.0 283 62.9
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 7.5e-94 347.8 264 65.5
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 9.8e-94 347.4 264 66.3
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 1.3e-93 347.1 283 62.2
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 2.2e-93 346.3 211 83.4
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 2.8e-93 345.9 265 67.2
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 2.8e-93 345.9 412 50.5
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 6.3e-93 344.7 281 63.3
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 8.3e-93 344.4 272 63.6
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 8.3e-93 344.4 260 68.1
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 1.1e-92 344.0 281 61.9
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 1.8e-92 343.2 266 66.5
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 2.4e-92 342.8 262 69.8
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.1e-92 342.4 275 64.0
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 3.1e-92 342.4 268 66.0
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 9.2e-92 340.9 287 63.1
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 1.2e-91 340.5 223 73.5
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 1.6e-91 340.1 219 74.9
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 3.5e-91 339.0 328 56.7
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 7.8e-91 337.8 260 65.4
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.9e-89 333.2 266 62.8
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.3e-89 332.4 216 74.5
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 3.3e-89 332.4 276 61.6
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 1.6e-88 330.1 260 63.1
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 3.6e-88 328.9 254 64.6
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 3.6e-88 328.9 264 62.9
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 3.6e-88 328.9 265 61.9
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 1.0e-87 327.4 311 55.9
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 1.4e-87 327.0 283 61.8
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 1.8e-87 326.6 273 61.2
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 5.2e-87 325.1 233 68.7
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 8.9e-87 324.3 293 59.0
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 2.0e-86 323.2 261 62.8
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 3.4e-86 322.4 261 62.5
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 5.7e-86 321.6 273 60.1
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 5.7e-86 321.6 271 59.4
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 8.3e-85 317.8 263 60.8
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 1.1e-84 317.4 281 59.8
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 1.1e-84 317.4 268 61.2
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 1.4e-84 317.0 270 60.0
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 7.0e-84 314.7 263 61.2
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 1.2e-83 313.9 267 60.7
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 1.2e-83 313.9 267 60.7
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 2.0e-83 313.2 279 59.9
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.7e-83 312.8 284 56.7
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 2.7e-83 312.8 284 56.7
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 4.6e-83 312.0 268 60.8
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 4.6e-83 312.0 262 61.1
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 4.6e-83 312.0 234 67.1
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 4.3e-81 305.4 256 62.9
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 1.8e-79 300.1 283 56.2
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.0e-79 298.9 297 55.9
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 4.0e-79 298.9 246 63.8
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 1.7e-77 293.5 266 57.1
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 2.2e-77 293.1 227 63.4
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 1.4e-76 290.4 194 74.2
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 1.9e-76 290.0 210 70.0
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 1.2e-75 287.3 214 65.4
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 1.6e-75 287.0 267 54.3
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 4.6e-75 285.4 180 74.4
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 3.9e-74 282.3 262 54.2
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 6.6e-74 281.6 224 63.4
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 6.6e-74 281.6 263 53.6
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 4.3e-73 278.9 273 54.9
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 1.5e-70 270.4 236 57.6
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 2.0e-70 270.0 220 60.0
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 8.3e-69 264.6 208 62.5
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 7.1e-68 261.5 222 57.7
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 9.2e-68 261.2 190 67.9
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 2.1e-67 260.0 259 55.2
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 4.6e-67 258.8 186 67.7
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.9e-65 253.4 194 64.9
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 3.1e-63 246.1 223 60.5
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 5.2e-63 245.4 218 61.5
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 2.6e-62 243.0 190 63.7
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 1.3e-61 240.7 214 58.4
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 4.1e-60 235.7 213 56.8
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 5.4e-60 235.3 209 60.3
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 1.6e-59 233.8 207 56.5
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 1.7e-58 230.3 174 63.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.5e-57 227.3 239 52.7
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 4.3e-57 225.7 168 66.7
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 3.8e-53 212.6 199 55.3
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.2e-51 207.6 289 43.6
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 3.9e-50 202.6 178 60.7
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.8e-47 193.7 157 62.4
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 2.4e-47 193.4 231 42.9
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.7e-45 187.2 174 56.9
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.9e-45 185.7 174 57.5
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 3.2e-44 183.0 237 43.5
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 2.1e-43 180.3 249 41.8
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 7.4e-41 171.8 193 51.8
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 4.5e-38 162.5 135 59.3
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 3.2e-36 156.4 134 61.2
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 1.0e-34 151.4 190 44.2
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 3.3e-33 146.4 261 35.2
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 4.0e-31 139.4 261 34.5
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 4.6e-27 125.9 159 48.4
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 3.4e-22 109.8 202 37.1
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 1.5e-17 94.4 87 55.2
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 8.2e-16 88.6 128 45.3
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 1.2e-14 84.7 66 66.7
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 5.5e-12 75.9 66 51.5
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 7.2e-12 75.5 93 45.2
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 4.5e-06 56.2 44 61.4


User provided reference genes

Program Settings