Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.7e-269 931.4 467 100.0
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 9.6e-259 896.3 467 95.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.3e-219 765.0 470 80.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.8e-209 732.6 461 79.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 7.8e-200 700.7 469 74.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.9e-199 698.7 465 74.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.5e-198 695.7 474 74.3
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.3e-198 695.3 468 73.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.0e-196 690.3 470 71.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 5.2e-196 688.0 469 74.4
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.8e-196 687.6 466 72.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-195 686.4 466 73.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.7e-194 682.9 474 71.3
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 4.9e-194 681.4 468 72.0
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.4e-194 681.0 469 72.5
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.9e-193 679.5 469 72.3
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 7.0e-193 677.6 466 71.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.2e-192 676.8 465 73.1
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.0e-192 676.0 469 72.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.0e-192 676.0 467 71.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.5e-192 675.2 467 71.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 4.6e-192 674.9 469 72.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.7e-191 672.9 469 72.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.0e-191 672.2 470 72.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.9e-191 671.8 481 71.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 5.0e-191 671.4 468 71.6
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-190 670.2 467 71.1
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.5e-190 669.8 469 71.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 4.3e-190 668.3 462 72.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.6e-190 667.9 469 71.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.8e-188 662.9 481 70.5
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 4.0e-188 661.8 466 71.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.0e-188 661.8 460 72.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.6e-187 659.1 467 71.1
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.4e-187 658.7 466 73.0
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.4e-187 658.3 465 71.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-186 655.6 460 72.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.4e-186 654.4 467 70.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.3e-186 654.1 467 69.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.1e-185 653.7 454 71.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-185 653.7 469 69.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.4e-185 653.3 478 68.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 3.2e-185 652.1 471 67.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.2e-185 652.1 469 69.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 4.6e-184 648.3 464 70.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.0e-183 647.1 461 69.6
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 6.6e-183 644.4 468 69.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 6.2e-181 637.9 448 71.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.3e-180 636.0 470 68.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.3e-180 636.0 464 69.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.0e-179 632.9 471 67.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.4e-177 625.9 469 67.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.4e-177 624.8 459 67.3
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.0e-175 620.5 467 68.1
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.7e-173 611.7 455 68.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.4e-172 610.1 467 65.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.8e-172 607.8 477 65.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.4e-171 605.5 477 66.7
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 8.4e-170 600.9 471 65.4
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 9.3e-169 597.4 471 64.1
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.1e-167 591.7 468 62.6
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.3e-166 588.6 461 63.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 6.9e-164 581.3 467 61.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.9e-164 581.3 465 62.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 8.4e-162 574.3 461 63.6
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-161 573.9 466 63.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.9e-161 573.2 463 63.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.2e-161 572.0 469 61.0
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.1e-159 565.1 472 61.0
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 7.3e-158 561.2 451 61.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 7.3e-158 561.2 466 63.1
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.6e-157 558.9 466 62.4
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.6e-157 558.9 472 62.3
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.8e-157 558.5 475 61.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.3e-156 555.1 455 61.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.3e-156 555.1 473 60.7
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-156 555.1 466 60.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.2e-155 553.9 453 62.5
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.5e-155 552.0 454 61.5
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-154 550.1 463 60.0
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.4e-153 545.0 462 60.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.6e-152 542.0 472 60.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.3e-151 540.4 466 60.1
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 3.0e-151 539.3 455 59.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 2.5e-150 536.2 467 60.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-149 533.9 469 60.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.6e-149 533.5 469 57.6
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.4e-147 525.8 471 57.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.5e-147 525.4 463 58.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.6e-147 524.6 465 57.4
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.7e-146 523.5 463 57.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.2e-146 523.1 462 57.4
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.1e-145 520.8 467 57.2
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.1e-145 520.8 471 56.7
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.4e-145 520.4 470 58.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 7.9e-144 514.6 463 57.2
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-143 514.2 462 57.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.1e-143 511.9 462 57.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.1e-142 510.8 402 62.7
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.5e-142 510.4 462 58.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.5e-142 509.6 462 56.7
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.3e-142 508.8 462 57.6
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-142 508.4 463 56.8
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-142 508.4 462 56.5
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-141 506.9 464 56.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.8e-141 505.4 471 56.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.3e-140 501.9 461 57.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.6e-139 499.6 475 55.6
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.6e-139 499.6 464 56.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.6e-139 499.6 460 57.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 5.8e-139 498.4 465 56.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 5.8e-139 498.4 462 55.4
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.0e-138 497.7 464 55.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-138 497.3 464 55.6
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-138 496.9 464 55.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.5e-138 495.0 461 57.0
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-138 495.0 464 55.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-138 495.0 464 55.8
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 4.2e-137 492.3 461 56.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 9.3e-137 491.1 461 56.6
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 9.3e-137 491.1 460 55.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 9.3e-137 491.1 471 53.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 2.1e-136 490.0 460 56.1
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.5e-136 489.2 461 56.4
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.5e-136 489.2 461 56.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.6e-136 488.8 468 53.4
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 6.1e-136 488.4 471 54.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 7.9e-136 488.0 461 56.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 6.7e-135 485.0 468 56.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.7e-134 481.9 346 70.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.7e-134 481.9 346 70.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.8e-133 479.6 463 55.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.3e-133 478.4 464 54.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 8.2e-133 478.0 463 54.2
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 8.2e-133 478.0 463 54.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-132 476.9 466 53.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-132 475.3 454 53.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-130 470.7 463 53.1
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.9e-130 469.5 394 57.4
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.8e-130 469.2 463 52.9
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.9e-129 466.8 439 54.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-129 464.9 462 54.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.6e-128 463.8 465 52.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.3e-126 456.1 456 53.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.8e-125 452.2 427 54.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.7e-120 435.6 435 51.7
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.2e-113 412.9 439 49.9
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-99 367.9 433 46.4
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-98 362.5 431 44.8
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.5e-98 362.1 432 45.4
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 8.5e-98 361.7 463 46.2
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.5e-97 359.0 432 45.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.4e-97 358.2 427 44.3
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.5e-89 333.6 336 57.4
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 9.5e-89 331.6 350 52.9
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.3e-77 292.0 338 44.4
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.3e-74 283.9 202 71.3
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-68 264.6 205 64.4
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.3e-65 253.1 203 60.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 5.6e-65 252.7 203 60.6
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.6e-57 225.3 158 67.7
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.9e-53 213.0 216 52.8
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-51 208.4 164 66.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.9e-45 186.4 290 40.7
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.1e-32 144.4 137 51.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 8.4e-29 132.5 286 36.4
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.8e-21 107.1 103 55.3
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 3.9e-18 97.1 88 56.8
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.3e-16 92.0 104 47.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.2e-16 91.3 90 55.6
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 8.5e-13 79.3 168 36.3
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.3e-09 67.4 65 50.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 5.3e-07 60.1 101 38.6
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 5.3e-07 60.1 47 61.7


User provided reference genes

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