Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001339 Carpinus fangiana HOM05D000021 ORTHO05D014900 4.3e-40 167.5 85 100.0
QL08p062784 Quercus lobata HOM05D000021 ORTHO05D000010 1.6e-18 95.9 75 68.0
Cfa001340 Carpinus fangiana HOM05D000021 ORTHO05D014900 2.7e-18 95.1 78 60.3
Cfa001338 Carpinus fangiana HOM05D000021 ORTHO05D014900 1.8e-17 92.4 72 66.7
QL08p062836 Quercus lobata HOM05D000021 ORTHO05D014900 6.7e-17 90.5 75 64.0
QL08p062915 Quercus lobata HOM05D000021 ORTHO05D000010 1.3e-15 86.3 74 60.8
Cfa001335 Carpinus fangiana HOM05D000021 ORTHO05D014900 1.4e-14 82.8 75 61.3
CiPaw.05G135900 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.4e-14 82.8 88 51.1
CiPaw.02G190300 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.4e-13 78.2 69 55.1
CiPaw.09G088800 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.7e-12 75.9 73 57.5
QL09p049222 Quercus lobata HOM05D000021 ORTHO05D000010 3.8e-12 74.7 84 48.8
QL08p062967 Quercus lobata HOM05D000021 ORTHO05D000010 6.5e-12 73.9 66 54.5
QL08p060205 Quercus lobata HOM05D000021 ORTHO05D000010 2.5e-11 72.0 68 52.9
QL08p061607 Quercus lobata HOM05D000021 ORTHO05D000010 2.5e-11 72.0 68 52.9
QL08p061542 Quercus lobata HOM05D000021 ORTHO05D000010 3.2e-11 71.6 68 54.4
QL04p089423 Quercus lobata HOM05D000021 ORTHO05D000010 7.2e-11 70.5 70 50.0
QL03p070905 Quercus lobata HOM05D000021 ORTHO05D000010 9.4e-11 70.1 68 52.9
QL04p089013 Quercus lobata HOM05D000021 ORTHO05D000010 9.4e-11 70.1 61 55.7
QL08p061571 Quercus lobata HOM05D000021 ORTHO05D000010 1.2e-10 69.7 68 52.9
QL08p062904 Quercus lobata HOM05D000021 ORTHO05D000010 1.2e-10 69.7 66 54.5
QL08p060521 Quercus lobata HOM05D000021 ORTHO05D000010 1.6e-10 69.3 68 51.5
QL12p007509 Quercus lobata HOM05D000021 ORTHO05D014900 1.6e-10 69.3 62 61.3
QL08p061625 Quercus lobata HOM05D000021 ORTHO05D000010 2.1e-10 68.9 64 56.2
QL08p062868 Quercus lobata HOM05D000021 ORTHO05D000010 2.1e-10 68.9 67 50.7
QL04p089571 Quercus lobata HOM05D000021 ORTHO05D000010 3.6e-10 68.2 61 52.5
QL08p062957 Quercus lobata HOM05D000021 ORTHO05D014900 3.6e-10 68.2 63 52.4
QL09p049326 Quercus lobata HOM05D000021 ORTHO05D000010 6.1e-10 67.4 68 52.9
Haze_17211 Corylus avellana HOM05D000021 ORTHO05D000010 7.9e-10 67.0 60 60.0
QL04p089985 Quercus lobata HOM05D000021 ORTHO05D000010 1.0e-09 66.6 70 48.6
QL04p062360 Quercus lobata HOM05D000021 ORTHO05D000010 1.4e-09 66.2 68 51.5
QL04p095240 Quercus lobata HOM05D000021 ORTHO05D000010 1.4e-09 66.2 72 47.2
Prupe.2G248300 Prunus persica HOM05D000021 ORTHO05D000010 2.3e-09 65.5 66 48.5
QL04p089963 Quercus lobata HOM05D000021 ORTHO05D000010 2.3e-09 65.5 70 48.6
QL08p063138 Quercus lobata HOM05D000021 ORTHO05D014900 2.3e-09 65.5 71 43.7
QL03p000683 Quercus lobata HOM05D000021 ORTHO05D000010 3.0e-09 65.1 75 46.7
QL04p089833 Quercus lobata HOM05D000021 ORTHO05D000010 3.0e-09 65.1 70 47.1
QL04p065292 Quercus lobata HOM05D000021 ORTHO05D000010 3.9e-09 64.7 72 44.4
QL08p060570 Quercus lobata HOM05D000021 ORTHO05D000010 3.9e-09 64.7 68 50.0
QL08p062910 Quercus lobata HOM05D000021 ORTHO05D000010 5.1e-09 64.3 63 49.2
FvH4_7g24920 Fragaria vesca HOM05D000021 ORTHO05D000010 8.8e-09 63.5 65 49.2
QL03p043205 Quercus lobata HOM05D000021 ORTHO05D014900 8.8e-09 63.5 71 47.9
RcHm_v2.0_Chr1g0370261 Rosa chinensis HOM05D000021 ORTHO05D000010 8.8e-09 63.5 63 50.8
RcHm_v2.0_Chr1g0370281 Rosa chinensis HOM05D000021 ORTHO05D000010 8.8e-09 63.5 63 50.8
Glyma.09G217200 Glycine max HOM05D000021 ORTHO05D000010 1.1e-08 63.2 58 55.2
Manes.18G127600 Manihot esculenta HOM05D000021 ORTHO05D000010 1.1e-08 63.2 76 44.7
FvH4_7g29910 Fragaria vesca HOM05D000021 ORTHO05D000010 1.5e-08 62.8 69 49.3
FAN01G1164 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-08 62.8 69 49.3
FAN06G0277 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-08 62.8 69 49.3
FAN06G4510 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.5e-08 62.8 69 49.3
QL04p089501 Quercus lobata HOM05D000021 ORTHO05D000010 1.5e-08 62.8 70 45.7
QL04p089659 Quercus lobata HOM05D000021 ORTHO05D000010 1.5e-08 62.8 70 45.7
QL09p003453 Quercus lobata HOM05D000021 ORTHO05D000010 1.5e-08 62.8 51 58.8
FAN03G3403 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.9e-08 62.4 69 49.3
arahy.Tifrunner.gnm1.ann1.PHQ037 Arachis hypogaea HOM05D000021 ORTHO05D000010 2.5e-08 62.0 55 54.5
FAN01G0213 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.5e-08 62.0 63 49.2
arahy.Tifrunner.gnm1.ann1.B30Q1Q Arachis hypogaea HOM05D000021 ORTHO05D000010 3.3e-08 61.6 53 54.7
FAN03G1818 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.3e-08 61.6 69 49.3
Glyma.15G202700 Glycine max HOM05D000021 ORTHO05D000010 4.3e-08 61.2 60 51.7
Manes.04G110442 Manihot esculenta HOM05D000021 ORTHO05D000010 4.3e-08 61.2 57 49.1
Manes.04G110590 Manihot esculenta HOM05D000021 ORTHO05D000010 4.3e-08 61.2 57 49.1
QL04p089332 Quercus lobata HOM05D000021 ORTHO05D000010 4.3e-08 61.2 70 45.7
RcHm_v2.0_Chr1g0351981 Rosa chinensis HOM05D000021 ORTHO05D000010 4.3e-08 61.2 76 43.4
arahy.Tifrunner.gnm1.ann1.6XQE5A Arachis hypogaea HOM05D000021 ORTHO05D014900 5.7e-08 60.8 55 52.7
FAN06G2787 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.7e-08 60.8 63 49.2
Manes.18G127100 Manihot esculenta HOM05D000021 ORTHO05D000010 5.7e-08 60.8 63 47.6
FAN12G2847 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.4e-08 60.5 59 52.5
QL04p089050 Quercus lobata HOM05D000021 ORTHO05D000010 7.4e-08 60.5 53 52.8
MBI18_g45720_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D029090 1.3e-07 59.7 56 44.6
QL11p022980 Quercus lobata HOM05D000021 ORTHO05D000010 1.3e-07 59.7 67 43.3
arahy.Tifrunner.gnm1.ann1.ZJ6MUL Arachis hypogaea HOM05D000021 ORTHO05D000010 1.7e-07 59.3 55 50.9
Ca_25061_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 1.7e-07 59.3 66 48.5
FvH4_7g24240 Fragaria vesca HOM05D000021 ORTHO05D000010 1.7e-07 59.3 71 46.5
FvH4_7g24242 Fragaria vesca HOM05D000021 ORTHO05D000010 1.7e-07 59.3 71 46.5
FAN06G1757 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.7e-07 59.3 61 49.2
Medtr5g026000 Medicago truncatula HOM05D000021 ORTHO05D000010 1.7e-07 59.3 60 51.7
FAN03G0659 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.2e-07 58.9 61 49.2
QL04p088568 Quercus lobata HOM05D000021 ORTHO05D000010 2.2e-07 58.9 68 47.1
CANSAT78G0064 Cannabis sativa HOM05D000021 ORTHO05D000010 2.8e-07 58.5 49 57.1
FAN10G0830 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.8e-07 58.5 68 42.6
FvH4_7g24510 Fragaria vesca HOM05D000021 ORTHO05D000010 4.8e-07 57.8 66 42.4
FAN01G1107 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.8e-07 57.8 68 42.6
FAN06G0119 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.8e-07 57.8 66 42.4
FAN06G4437 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.8e-07 57.8 66 42.4
Medtr5g026010 Medicago truncatula HOM05D000021 ORTHO05D000010 4.8e-07 57.8 60 55.0
RcHm_v2.0_Chr1g0345151 Rosa chinensis HOM05D000021 ORTHO05D000010 4.8e-07 57.8 63 46.0
Manes.18G127654 Manihot esculenta HOM05D000021 ORTHO05D000010 6.3e-07 57.4 75 45.3
Medtr5g044680 Medicago truncatula HOM05D000021 ORTHO05D000010 6.3e-07 57.4 43 58.1
Nn2g13677 Nelumbo nucifera HOM05D000021 ORTHO05D000010 6.3e-07 57.4 79 41.8
TPR.G29845 Trifolium pratense HOM05D000021 ORTHO05D000010 6.3e-07 57.4 52 50.0
FAN01G1213 Fragaria x ananassa HOM05D000021 ORTHO05D000010 8.2e-07 57.0 66 43.9
FAN10G3713 Fragaria x ananassa HOM05D000021 ORTHO05D000010 8.2e-07 57.0 69 47.8
RcHm_v2.0_Chr1g0369841 Rosa chinensis HOM05D000021 ORTHO05D000010 8.2e-07 57.0 67 44.8
Ca_25055_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 1.1e-06 56.6 57 50.9
Phvul.002G123500 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 1.1e-06 56.6 49 57.1
TAR624G1213 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.1e-06 56.6 67 49.3
CSS0027438 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.4e-06 56.2 71 45.1
Haze_20299 Corylus avellana HOM05D000021 ORTHO05D014900 1.8e-06 55.8 43 62.8
Manes.07G127100 Manihot esculenta HOM05D000021 ORTHO05D000010 1.8e-06 55.8 76 43.4
FvH4_7g24243 Fragaria vesca HOM05D000021 ORTHO05D000010 2.4e-06 55.5 66 43.9
FAN10G1697 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.4e-06 55.5 69 46.4
Glyma.09G216400 Glycine max HOM05D000021 ORTHO05D000010 2.4e-06 55.5 59 49.2
Lj2g0016215 Lotus japonicus HOM05D000021 ORTHO05D000010 2.4e-06 55.5 60 48.3
Manes.11G121400 Manihot esculenta HOM05D000021 ORTHO05D000010 2.4e-06 55.5 59 47.5
Manes.18G124300 Manihot esculenta HOM05D000021 ORTHO05D000010 2.4e-06 55.5 75 45.3
Medtr5g024420 Medicago truncatula HOM05D000021 ORTHO05D000010 2.4e-06 55.5 58 51.7
Medtr5g024450 Medicago truncatula HOM05D000021 ORTHO05D000010 2.4e-06 55.5 58 51.7
RcHm_v2.0_Chr1g0369861 Rosa chinensis HOM05D000021 ORTHO05D000010 2.4e-06 55.5 63 44.4
Glyma.02G100500 Glycine max HOM05D000021 ORTHO05D000010 3.1e-06 55.1 50 48.0
Glyma.03G096600 Glycine max HOM05D000021 ORTHO05D000010 3.1e-06 55.1 40 60.0
Manes.07G059800 Manihot esculenta HOM05D000021 ORTHO05D000010 3.1e-06 55.1 54 50.0
Manes.04G110470 Manihot esculenta HOM05D000021 ORTHO05D000010 4.1e-06 54.7 60 48.3
Medtr5g025840 Medicago truncatula HOM05D000021 ORTHO05D000010 4.1e-06 54.7 74 41.9
Phvul.002G123200 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 4.1e-06 54.7 45 53.3
Rhsim09G0176100 Rhododendron simsii HOM05D000021 ORTHO05D000010 4.1e-06 54.7 62 43.5
Rhsim09G0176200 Rhododendron simsii HOM05D000021 ORTHO05D000010 4.1e-06 54.7 62 43.5
Haze_20300 Corylus avellana HOM05D000021 ORTHO05D000010 5.3e-06 54.3 37 67.6
FAN10G1308 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.3e-06 54.3 66 42.4
Glyma.01G152200 Glycine max HOM05D000021 ORTHO05D000010 5.3e-06 54.3 53 50.9
Glyma.07G155800 Glycine max HOM05D000021 ORTHO05D000010 5.3e-06 54.3 73 39.7
Medtr5g019070 Medicago truncatula HOM05D000021 ORTHO05D000010 5.3e-06 54.3 60 48.3
Nn2g11444 Nelumbo nucifera HOM05D000021 ORTHO05D000010 5.3e-06 54.3 62 43.5
Actinidia23111 Actinidia chinensis HOM05D000021 ORTHO05D000010 6.9e-06 53.9 66 45.5
Manes.04G110563 Manihot esculenta HOM05D000021 ORTHO05D000010 6.9e-06 53.9 61 47.5
Medtr6g036890 Medicago truncatula HOM05D000021 ORTHO05D000010 6.9e-06 53.9 42 59.5
RcHm_v2.0_Chr1g0346851 Rosa chinensis HOM05D000021 ORTHO05D000010 6.9e-06 53.9 63 46.0
RcHm_v2.0_Chr1g0369961 Rosa chinensis HOM05D000021 ORTHO05D000010 6.9e-06 53.9 63 46.0
VMungo1215G2225 Vigna mungo HOM05D000021 ORTHO05D000010 6.9e-06 53.9 57 45.6
CSS0031329 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 9.1e-06 53.5 67 44.8
MBI14_g11422_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 9.1e-06 53.5 63 44.4
Medtr2g040910 Medicago truncatula HOM05D000021 ORTHO05D000010 9.1e-06 53.5 42 59.5
Psat6g028120 Pisum sativum HOM05D000021 ORTHO05D000010 9.1e-06 53.5 43 58.1


User provided reference genes

Program Settings